Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01990 ATGGTTTGTGAGATGGAGAGTGATTGTATTGAGGACATGGATGTTGAAGTCCTCTCTTCAATGTGGCCTGAAGATATTGGAACTGATGTTGGAAAACAGTTCAATATAGAAAAGCCTGGAAGGGACCAAGATATGTTAGAAGAGGTTACAATCTTAGAGGAACCAACTATAGCTGATTTTCAACGTCTCATGGAGCTTACAAATTATACAGATAAAGGGTCTTCTCAGTTGGCATATCTTATGAAACATTGGGAGTATAAGCAAGCAAATGCTGTTCGTCTTCTAAGGGAAGAGCTTGATATCCTTAGCAAACAAAGGAAGGAAGTCGAGTTAAGGAAGTTGGAGATATTGAAAGATAATAGATTTGAAGAAGAAAATTATGGTGGTGATAAACGACCAGTTTCTATATTGGATGAAGTTTACTATACATGGAAAGATGTACCTGTACCACTAAGGAAAAGTGATGTTGTTGTTCAAAATAAGAGAATTGAAATTGATGCTGAGTATGATACTGTTGTGTATTGGAAACAAAAGGCAATGGATTCGGAAAGACAGTTGGAGGCAAGTATCAAGAGAGAGCAGATACTTATGGATAAGTTGCAAGAAAGTATAAAGAATTTTGAAAGGCAATCCTCTCCTGTGGAAGAACTGTCTCAGATTCTGAAGAGGGCGGATAATTTCTTACATTTTATACTTCAAAATGCACCTGTTGTTATTGGCCATCAGGACAAAGAATTGCGCTATCGCTTTATCTATAATCATTTTCCAAGTTTACAAGAGGAGGAAATCATAGGAAAAACGGATGTTGAAATTTTCACAGGATCTGGTGTTAAGGAATCTCAAGATTTTAAGAGAGAAGTGATGGAGAAAGGATTACCTGCTAAAAAGGAAATTACTTTTGAGACAGAATTATTTGGGTCAAAGACATTTTTAATATATGTAGAACCTGTGTTTAGCAAGGCTGGGGAAACAATTGGAATAAATTATATGGGAATGGAAATAACAGATCAGGTGAGAAAAAGAGAAAGAATGGCAAAGCTAAGGGAAGAGATTGCAGTTCAGAAAGCCAAGGAAACAGAACTTAATAAAACCATTCATATTACAGAGGAGACTATGAGAGCAAAACAAATGCTGGCAACAATGTCTCATGAGATAAGATCTCCACTATCTGGGGTTGTTAGCATGGCTGAAATTCTTTCTACCACAAAACTTGATAAAGAGCAAAGACAACTCTTGGATGTCATGATATCTTCAGGAGACTTGGTTCTTCAACTTATAAATGACATACTTGATCTTTCCAAGGTTGAGTCAGGAGTTATGAAATTGGAAGCTACCAAATTCCGGCCAAGAGAGGTAGTAAAGCATGTACTCCAGACAGCTGCAGCATCATTGCAGAAAATGTTAACCTTAGAAGGAAATGTGGCAGATGATATACCTATTGAGGTCACAGGAGATGTTTTAAGGATTCGGCAGATTCTCACAAATTTAGTCAGTAATGCTGTCAAGTTTACACATGAAGGCAAAGTTGGCATAAACCTTTACGTGATTCCAGAACCACCTTTTTCCAAAGCAGAAGAAGGCCACCAAAAGATGAACACAGATCAGTCAAATATTTCAAATGGGGTGAAGGAAGATAAGCATCTATCAAAATCTCGAGCTAGAAGTGATCAAAATCTTCTTGATAGTAAAAAACACAATGACCATCCAACACAAAATCATGCATTTAATGATGAGTGTAGATCTTCAGTTAACAGTGAATGCTCAATGAATGGGGATACTGAGGAGCAAACTCATTCAAATGAAACAACAGTGTGGATACGTTGTGATGTATATGACACAGGAATTGGAATACCAGAAAAGGCTATTCCAACTTTATTTAGAAGGTACATGCAAGTCAGTGCAGACCATGCTCGAAAGTATGGAGGCACAGGGCTAGGACTAGCAATATGCAAGCAACTGGTTGAGTTAATGGGGGGTCGTCTAACAGTGACTAGCAAAGAACATTGTGGTTCTACCTTCACTTTCATACTCCCATACAAGGTTTCAACAGCTTGTGATAATTCTGATGACCCAGATGATCTCTCAGATGTGGAGAATAATGATGATGATGATACAACAGAGGGCTTCTTCCAATTTCAACCACGCACTTTGGGCTCTTTGTTCTCTTCTAATGGATGTAGCAGGCATCAAAATATATTACCAGGCTATAGAAGCTCACATAAGTTTAATGGTTTTTCAGAGAATTCTTACTCATTCCTCTCTAGTAACATCATACCAAAAGGGACAAGTCCAATTGAGGATGCATCTTCAGTTATTGTTGATGCTCTTGAGATGTCTGAATCAACAAGTTCATCATGTCACACCCCAGAAACAAAGCATGGAAGTTTAGTTAATAGAAACAAACAGAACCAAGATATGACACATGTTCGGTTACAGAATGGTACTGCAGACTCTTGTCAATTTAAGGAGGCAAGTAGAGAAATGATTGTAGCAACAAAGCCAAGTGAATCCCAGCAAACATGTCAGGGTCAATTGAACGCAGATTTAAATTCCCAATGTGTTATTAGCAGTAGTAGTAACACAACATCAGAAGTAACCAAATCCACATTGAATCCTAGGATTCTTCTTGTTGAAGATAACAAGATCAATGTCATGGTGACACAGTCAATGATGAAGCGGTTAGGTTATAACATGGATGTTGTGAATAATGGAGTGGAAGCCGTACGTGCAGTTATGCTCCATACTTATGACATCATTCTGATGGATGTTTTCATGCCAGTTATGAATGGTCTTCAAACAACAAAGCTGATTCGGTCTTACGAGGAAACGGGTAGTTGGGAAGCAGCAAGAAAAGCTGGAATTGAACAAAGTTTATCAGCATCAGATGAATGTTCTGGACCACCCAAAAAGCGTATCCACATTATCGCGATGACAGCAAACACATTGGCAGAGAGTGCTGAAGAATGTTTTGCAAATGGTATGGACTCATTTGTGTCAAAACCTGTGACTTTCCAAAAATTGAAAGAGTGTCTGGAACAGTATCTAAGGTGA 3051 0.3818 MVCEMESDCIEDMDVEVLSSMWPEDIGTDVGKQFNIEKPGRDQDMLEEVTILEEPTIADFQRLMELTNYTDKGSSQLAYLMKHWEYKQANAVRLLREELDILSKQRKEVELRKLEILKDNRFEEENYGGDKRPVSILDEVYYTWKDVPVPLRKSDVVVQNKRIEIDAEYDTVVYWKQKAMDSERQLEASIKREQILMDKLQESIKNFERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPSLQEEEIIGKTDVEIFTGSGVKESQDFKREVMEKGLPAKKEITFETELFGSKTFLIYVEPVFSKAGETIGINYMGMEITDQVRKRERMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDKEQRQLLDVMISSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKMLTLEGNVADDIPIEVTGDVLRIRQILTNLVSNAVKFTHEGKVGINLYVIPEPPFSKAEEGHQKMNTDQSNISNGVKEDKHLSKSRARSDQNLLDSKKHNDHPTQNHAFNDECRSSVNSECSMNGDTEEQTHSNETTVWIRCDVYDTGIGIPEKAIPTLFRRYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKEHCGSTFTFILPYKVSTACDNSDDPDDLSDVENNDDDDTTEGFFQFQPRTLGSLFSSNGCSRHQNILPGYRSSHKFNGFSENSYSFLSSNIIPKGTSPIEDASSVIVDALEMSESTSSSCHTPETKHGSLVNRNKQNQDMTHVRLQNGTADSCQFKEASREMIVATKPSESQQTCQGQLNADLNSQCVISSSSNTTSEVTKSTLNPRILLVEDNKINVMVTQSMMKRLGYNMDVVNNGVEAVRAVMLHTYDIILMDVFMPVMNGLQTTKLIRSYEETGSWEAARKAGIEQSLSASDECSGPPKKRIHIIAMTANTLAESAEECFANGMDSFVSKPVTFQKLKECLEQYLR* 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01990 1016 SMART HisKA_10 373 438 IPR003661 GO:0000155|GO:0007165
Rops9g01990 1016 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 484 679 IPR003594 -
Rops9g01990 1016 SMART HKATPase_4 484 681 IPR003594 -
Rops9g01990 1016 Pfam His Kinase A (phospho-acceptor) domain 375 438 IPR003661 GO:0000155|GO:0007165
Rops9g01990 1016 FunFam Histidine kinase 5 215 350 - -
Rops9g01990 1016 Coils Coil 1011 1016 - -
Rops9g01990 1016 FunFam Histidine kinase 5 866 1016 - -
Rops9g01990 1016 SUPERFAMILY CheY-like 872 1016 IPR011006 -
Rops9g01990 1016 Coils Coil 183 210 - -
Rops9g01990 1016 Gene3D PAS domain 215 350 - -
Rops9g01990 1016 PRINTS Bacterial sensor protein C-terminal signature 641 659 IPR004358 GO:0016310|GO:0016772
Rops9g01990 1016 PRINTS Bacterial sensor protein C-terminal signature 665 678 IPR004358 GO:0016310|GO:0016772
Rops9g01990 1016 PRINTS Bacterial sensor protein C-terminal signature 606 620 IPR004358 GO:0016310|GO:0016772
Rops9g01990 1016 FunFam Probable histidine kinase 1 568 684 - -
Rops9g01990 1016 ProSiteProfiles Response regulatory domain profile. 873 1015 IPR001789 GO:0000160
Rops9g01990 1016 Coils Coil 344 364 - -
Rops9g01990 1016 SMART REC_2 872 1011 IPR001789 GO:0000160
Rops9g01990 1016 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 427 680 IPR036890 -
Rops9g01990 1016 CDD HATPase_EvgS-ArcB-TorS-like 489 678 - -
Rops9g01990 1016 Gene3D - 361 438 - -
Rops9g01990 1016 MobiDBLite consensus disorder prediction 524 577 - -
Rops9g01990 1016 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 13 1015 - -
Rops9g01990 1016 Coils Coil 92 112 - -
Rops9g01990 1016 FunFam Putative histidine kinase 5 361 438 - -
Rops9g01990 1016 MobiDBLite consensus disorder prediction 540 574 - -
Rops9g01990 1016 CDD HisKA 372 434 IPR003661 GO:0000155|GO:0007165
Rops9g01990 1016 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 372 438 IPR036097 GO:0000155|GO:0007165
Rops9g01990 1016 Pfam Response regulator receiver domain 874 941 IPR001789 GO:0000160
Rops9g01990 1016 CDD REC_hyHK_CKI1_RcsC-like 874 1011 - -
Rops9g01990 1016 ProSiteProfiles Histidine kinase domain profile. 380 681 IPR005467 -
Rops9g01990 1016 Gene3D - 439 684 IPR036890 -
Rops9g01990 1016 Gene3D - 866 1016 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01990 Rops-Chr9 36785813 36792411 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01990 1 1015 Histidine Kinase Gene Family AT5G10720 57.490 0.0 1096
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops9g01990 HATPase_c 3.3e-27 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01990 - - gmx:100796072 1733