Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01989 ATGGCCTCCAAGCTCTGTGATTCCTGCAAATCCGCAACGGCCAATTTGTTCTGCCGTGCCGACTCCGCTTTCCTCTGTCTCCCCTGTGACGCCAAGATCCACGCCGCTAACAAACTCGCCTCACGCCATCCACGTGTCACTCTTTGCGAGGTCTGTGAGCAAGCCCCTGCTCACGTGACCTGTAAGGCGGACGCCGCCGCACTATGCGTCTCCTGTGACCATGACATCCACTCCGCTAACCCCCTCGCTAGCCGTCACCACCGTCTCCCTATTACTCCCTTCCACCACCACAATCACAACGCTTACTTCTCCGATCATGATGACGTCACCACCGAAGAGGCTGAGGAAGCCGCTTCGTGGCTTCTCCCTACTCCTTCGAACCCTAAGGGACCAGATCTCAACAACGCTAATTACTCCTTCAACGAATTCGATGATTTCGTCGCCAAAATGGACTCGCCGGAGCATAACAGCACCGCCGCCACCGACGTTGTTGTTCCGGTGCAGTTAAAAAACAAATCCAACACCGAACACTACTACCACAACAACAATAACAACATGGATTTGGATTTCACTACCTCTAAGCCTTTTGCTTACAATTACAACACGGACTCGCAGTGTATGAGCCTCAGCCACAGCGTATCGTCGCCGTCGATGGAGGTTGGTGTTGTGCCGGACGGGAATGCGATGTCGGAGATCTCGTACTGCTGCTACGGCAACCCGGTGACGGTTCCAGCGACGGAGGCGGTTCCGATCTCGGCGGCGGATAGGGAAGCTAGGGTTTTAAGGTACAGAGAGAAAAGAAAGAATCGAAGGTTCGAGAAGACTATTCGTTACGCTTCTAGGAAAGCGTATGCGGAAACAAGGCACAGGATTAAAGGAAGGTTCGCTAAACGCACCGATGTGAATCTACTCACCGAGGAAGACCCTTTTGCTGGATACGGCGTCGTTCCCACCTGTTAA 960 0.5344 MASKLCDSCKSATANLFCRADSAFLCLPCDAKIHAANKLASRHPRVTLCEVCEQAPAHVTCKADAAALCVSCDHDIHSANPLASRHHRLPITPFHHHNHNAYFSDHDDVTTEEAEEAASWLLPTPSNPKGPDLNNANYSFNEFDDFVAKMDSPEHNSTAATDVVVPVQLKNKSNTEHYYHNNNNNMDLDFTTSKPFAYNYNTDSQCMSLSHSVSSPSMEVGVVPDGNAMSEISYCCYGNPVTVPATEAVPISAADREARVLRYREKRKNRRFEKTIRYASRKAYAETRHRIKGRFAKRTDVNLLTEEDPFAGYGVVPTC* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01989 319 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Rops9g01989 319 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 6 301 IPR045281 GO:0009909
Rops9g01989 319 SMART bboxneu5 1 48 IPR000315 GO:0008270
Rops9g01989 319 SMART bboxneu5 49 91 IPR000315 GO:0008270
Rops9g01989 319 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
Rops9g01989 319 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Rops9g01989 319 CDD Bbox1_BBX-like 5 48 - -
Rops9g01989 319 Pfam CCT motif 256 298 IPR010402 GO:0005515
Rops9g01989 319 ProSiteProfiles CCT domain profile. 256 298 IPR010402 GO:0005515
Rops9g01989 319 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Rops9g01989 319 CDD Bbox1_BBX-like 48 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01989 Rops-Chr9 36686422 36687828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01989 1 318 C2C2-CO-like Transcription Factor Family AT5G24930 51.351 6.63e-100 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Rops9g01989 zf-B_box 2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01989 - - psat:127091607 428.328