Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01976 ATGGCCATTCAGGAGTTTTTCAAAGTTTTTCTCCAACAGACTTCTTTGTCACACCTGCGATTACCTAACTCATTCGTGAGGTACTTCAACGGAATCACACCATCGACGACAAATGTTGTTGATGAACAAGGAAATACCTGGCAACTTGGACTACAGAATCTCCACCACGGCTTGACCTTCACAACTGGGTGGCCTCAATTCGTGCTGGGAAAAGCCTTGGACGATCGAGACTTTTTGGTTTTTACCTATGAGGGTGGGTTGACATTCGGTGTCAAGGTCTTCGGCAAAGATGGGTGCAAGAAGACTGCGGCCTCTACGGATGTCATTCTGTTGGATCATGATTCTGACACCAATACCACACACTCCCCATCAACTGTCAACCACAAAATCCACATACGACAAAATTCTGCAAGACAACCATTGTATTTGCCATCGCGATTCGTAAGGCACCATTTAACAAGAGACATGAACTCCGTCACCTTGAATTCATCTTCATCTACGGTTGACTGTAGGCTACTGTGGAATACCAGTAATCAAAATGTATGTTACATTGGTAAAGGTTGGTCGCAATTTATGAGGGATAATCATTTGGTTGATGGTGATGAGGTTATTTTTTCCCCCACGAACCATCGTGGTGTTTTCCAACTTGAAATTAACCGTGTTAACGATGTGTAG 675 0.437 MAIQEFFKVFLQQTSLSHLRLPNSFVRYFNGITPSTTNVVDEQGNTWQLGLQNLHHGLTFTTGWPQFVLGKALDDRDFLVFTYEGGLTFGVKVFGKDGCKKTAASTDVILLDHDSDTNTTHSPSTVNHKIHIRQNSARQPLYLPSRFVRHHLTRDMNSVTLNSSSSTVDCRLLWNTSNQNVCYIGKGWSQFMRDNHLVDGDEVIFSPTNHRGVFQLEINRVNDV* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01976 224 ProSiteProfiles B3 DNA-binding domain profile. 126 222 IPR003340 GO:0003677
Rops9g01976 224 ProSiteProfiles B3 DNA-binding domain profile. 4 97 IPR003340 GO:0003677
Rops9g01976 224 PANTHER B3 DOMAIN-CONTAINING 5 116 - -
Rops9g01976 224 Gene3D - 2 99 IPR015300 -
Rops9g01976 224 Pfam B3 DNA binding domain 136 214 IPR003340 GO:0003677
Rops9g01976 224 Pfam B3 DNA binding domain 6 94 IPR003340 GO:0003677
Rops9g01976 224 SUPERFAMILY DNA-binding pseudobarrel domain 6 99 IPR015300 -
Rops9g01976 224 CDD B3_DNA 141 220 IPR003340 GO:0003677
Rops9g01976 224 CDD B3_DNA 6 94 IPR003340 GO:0003677
Rops9g01976 224 SUPERFAMILY DNA-binding pseudobarrel domain 134 220 IPR015300 -
Rops9g01976 224 Gene3D - 113 224 IPR015300 -
Rops9g01976 224 SMART B3_2 6 97 IPR003340 GO:0003677
Rops9g01976 224 SMART B3_2 127 222 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01976 6 117 REM Transcription Factor Family AT3G53310 33.628 2.43e-15 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops9g01976 B3 4.9e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01976 - - ccaj:109795839 118.627