Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01949 ATGGCAAACTGTCACCGGAATAACGTCGGAAATCTTGTTCTCGGCGATCACCACTCTACCAAGACGGCAACCTTCGCAAGCCATTTCCGTCTATGGAACTCTCTCTCCGTGGCTTCCTTCCGCCGCGTAATCTTTGACGCCGTCAGCTGCGGCGCGAGCTCTCGTTACCACCGCCGCCGCCGCCACGAAGATGATGACGACTTCTCCTCGACGGTGAGATCGGAATCCTCCTGCTCCGACGAGAAACGGCAACAACGACGACAGAACGAACATAGTTCGAAGCAGAATGTGAGGTCGGAGAAGCTATCGGATCTGCTGAACATGGCGGAGACGGAAGCGGAGGTGGAGACTAAGAAAAAGGAGGAGGCGCTTGAGGAACTGAAGCGGTTGATGAAGGAGTTGCAGGAGGAAGATGATTCAGAAAAGCGGCGAGTTGCTGCGGCAACAGTGAGGCTTCTCGCGAAGGAGAATTTGGAAATGAGAGGAACACTCGCAATGCTTGGCGCGATTCCTCCTCTCGTTGCAATGCTCGATTCTGAAGATATCGATTCTCAGATCGCTTCGCTTTATGCGTTGCTCAATCTCGGAATCGGAAACGATGCAAATAAAGCAGCTATTGTGAAAGTTGGCTCTGTTCATAAGATGTTGAAGCTTATTGAATCTCCAGAGGGTCCTGATTCGGCGGTTTCTGAAGCAATTGTTGCGAATTTCCTTGGATTGAGTGCTTTGGATTCGAACAAACCGATAATTGGGTCTTCATCTGCAATACCATTCCTAGTTAGAACCCTTAAGAGTTTAGATAATAAAAGTAGCAGCCAAGCTAAGCAAGATGCTCTCCGAGCATTGTACAATCTTTCAATCTTCTCAGGAAATAGTTCATTCATTTTGGAAACAGACTTGGTCCCATTTCTGATAAACTCAATAGGAGACATGGAAGTTACTGAAAGAACCCTCTCAATCCTTAGCAATTTGGTGTCAACCCGAGAGGGTAGAAAAGCTATCAGTGCTGTGCCAGATGCGTTACCTATCCTGGTGGATGTATTGAATTGGACAGATTCACCGGAATGCCAGGAAAAGACATCCTATATTTTGATGGTTATGGCACATAAATCCTATAGTGACAAGCAGGCCATGATTGAGGCAGGGATCGTGTCATCACTGCTTGAGTTGTCGCTTCTTGGCACTACATTAGCTCAGAAAAGGGCCTCAAGGATATTGGAAAGTTTGAGGGTAGACAAAGGGAAACAGGTTTCTGGGAGCTATGGTGGAAATTTAGGTGCAACTGTCTCTGCCCCAATTTGTGGCTCTTCATCATCTTGTGCAAAGCCTGATGGAGAAGGAAAAGAGTGTTCCGAGGAGGAGGAAGATATGATGAGTGAGGAGAAAAAAGCAGTGAAGCAATTAGTCCAACAGAGTTTGCAGAACAACATGAGGAAAATTGTAAAGAGGGCTAACTTGCCCCAAGACATCGTTCCTTCCGATCATTTTAAGTCTCTTACTTTAAGTTCGACATCAAAGAGCCTGCCATTTTGA 1533 0.4671 MANCHRNNVGNLVLGDHHSTKTATFASHFRLWNSLSVASFRRVIFDAVSCGASSRYHRRRRHEDDDDFSSTVRSESSCSDEKRQQRRQNEHSSKQNVRSEKLSDLLNMAETEAEVETKKKEEALEELKRLMKELQEEDDSEKRRVAAATVRLLAKENLEMRGTLAMLGAIPPLVAMLDSEDIDSQIASLYALLNLGIGNDANKAAIVKVGSVHKMLKLIESPEGPDSAVSEAIVANFLGLSALDSNKPIIGSSSAIPFLVRTLKSLDNKSSSQAKQDALRALYNLSIFSGNSSFILETDLVPFLINSIGDMEVTERTLSILSNLVSTREGRKAISAVPDALPILVDVLNWTDSPECQEKTSYILMVMAHKSYSDKQAMIEAGIVSSLLELSLLGTTLAQKRASRILESLRVDKGKQVSGSYGGNLGATVSAPICGSSSSCAKPDGEGKECSEEEEDMMSEEKKAVKQLVQQSLQNNMRKIVKRANLPQDIVPSDHFKSLTLSSTSKSLPF* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01949 510 Coils Coil 451 471 - -
Rops9g01949 510 Coils Coil 106 151 - -
Rops9g01949 510 MobiDBLite consensus disorder prediction 55 119 - -
Rops9g01949 510 SUPERFAMILY ARM repeat 126 407 IPR016024 -
Rops9g01949 510 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 168 210 IPR000225 GO:0005515
Rops9g01949 510 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 24 510 - -
Rops9g01949 510 MobiDBLite consensus disorder prediction 105 119 - -
Rops9g01949 510 MobiDBLite consensus disorder prediction 57 98 - -
Rops9g01949 510 Gene3D - 89 482 IPR011989 -
Rops9g01949 510 SMART arm_5 288 326 IPR000225 GO:0005515
Rops9g01949 510 SMART arm_5 199 242 IPR000225 GO:0005515
Rops9g01949 510 SMART arm_5 371 411 IPR000225 GO:0005515
Rops9g01949 510 SMART arm_5 157 197 IPR000225 GO:0005515
Rops9g01949 510 SMART arm_5 330 369 IPR000225 GO:0005515
Rops9g01949 510 SMART arm_5 243 287 IPR000225 GO:0005515
Rops9g01949 510 MobiDBLite consensus disorder prediction 436 462 - -
Rops9g01949 510 Pfam Armadillo/beta-catenin-like repeat 162 195 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01949 Rops-Chr9 35903620 35906714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01949 124 413 U-box Gene Family AT1G67530 31.313 1.86e-31 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01949 - - psat:127098188 704.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01949 9 35903620 35906714 Rops10g01354 10 26279603 26281447 PCT