Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01946 ATGGGTGATTCTAAAGACCAGTTTCCTGTAGGAATGCGCGTTCTTGCTGTTGATGATGACCCAACATGCCTCAAGGTTTTGGAGACTCTGCTTCGAAGGTGTCAATACCATGTAACGGTGGCTAAAAATGCAATAGCAGCACTTAAGTTGTTGAGAGAGAACAAAAACAAGTTTGATCTTGTAATCAGTGATGTACACATGCCCGACATGGATGGATTCAAGCTGCTTGAGCTTGTGGGACTTGAGATGGACCTACCTGTCATAATGTTGTCTGTAAATGGTGACCCCAAGATGGTGATGAAGGGAATTACTCATGGAGCTTGTGATTATCTGCTGAAACCTGTAAGAATTGAGGAGATTCGGAACATTTGGCAGCATGTAATAAGGAGGAAGAAGATTGACTCAAAGGAGAGGAACAAAAGCTGCAACAAAGACACACCTAATTTTGATATCTGCAATGAAAGAGGGGAAACAGCAACAGTGAATTCAGATCAAAATGAAAAGCCATCGAAAAAAAGGAAGGATCAGGATGAAGATGATGATGATGAGGGGCATGAGAATGGTCATGAAAATGAGGACCCATCAACCCAAAAGAAGCCTCGAGTTGTTTGGTCTCCGGAGCTGCATCGCAAGTTTGTTGAAGCTGTTCATCAATTAGGCGTTGACAAGGCTGTACCTAAAAAAATTCTTGATATGATGAATGTTGAAAAGCTAACAAGGGAGAATGTGGCCAGCCATCTCCAGAAATATAGACTTTATCTTAAAAAATATAGCAGCATGGCAAACCAGCAAGATAATATGGTGGCAGCCTTAGGTGGTGCTGATTCATCCTATATGAGATTGAGTTCTCTTAGTGGTGTTGGACATTTGCAGACTTTGAGCAGTTCAAGACAGTTTCATAACAATGCTTTCAGATCCTTTCCACCTGGTGGGATGATTAGTAGATTGAACACTACTGCTAGTCTGAATGTGCATGGTTTGCCTTCTTCAAGAACTCTTCAGTTGGGTCATGCACAAAAGTTAAACAACTCCACAAATGATCAACTTAAGTTCCAATCAGCCATAGTTCATGGTAATCAGAATGGTGTTCAGGGAATGCCAATGTCCATGGGGCTTGATCAATTGCAACACAATAAGGGTGTTGGTCCTATTCAAAACCTGACCACTCTTATGGATGCTAAAACAACTTTTCTCATCACTAGTAAACTCCCACATCAAAGACCAAAAGTAACATTGGGTTGCTCACCTTCACCAGTATTGGATATCTCAAAAAATACCATGAAGTTGAAAGCAAATCCTCAAGATAAACAAGTGTGTGGAGTATACAATTCACAATTTTCTCTCCCTGTGGTGGATAATGGAAAGTGTAATGATGTTTGGTCAAGTGCTGCTATGCCTTCTACAGATAACATGGCTTCTGCACCCTTGCAAGGAGCTAATCTGAGTGGTTTTTCATCCATCATTCCACTGTCCAGTCAACCCCTTGATTCATTGACAAATATGCACTCCCAAGATGTCATTTTTACAAATACTCCTGAGCAAATCAGTAGTAGTGCACCATTTCAAGGGTGGGATAACCATAACCAAGATGGCAGTTACCATTCTCATGTTATTGGCAGTCCAATAGGCTCTATCATTCCCCTGAATGCTGCTGTTGATCCTAATTATCTTGATTCACTGGAAGATCTGATTCTGTTCTGGGTTTTGGCTTCAGCCATAAAACAGAGACTCTATTTGGTTCAAGCTAAGACCCTTTTGCGAGAAAATCATCATAGTGTGGAGCATCATAAGATGGACGATTCTAAAGACCAGTTTCCTGTAGGAATGCGCGTTCTTGCTGTTGATGATGACCCAACATGCCTCATGGTTTTGGAGAGACTGCTTCGAAGGTGTCAATACCATGTAACGGTGGCTAAAAATGCAATAGCAGCACTTAAGTTGTTGAGAGAAAACAAAAACAAGTTTGATCTGGTAATCAGTGATGTCCACATGCCAGACATGGATGGATTCAAGCTGCTTGAGCTTGTGGGACTTGAGATGGACCTACCTGTCATAATGTTGTCTGTAAATGGTGACCCCAAGATGGTGATGAAGGGAATTACTCATGGAGCTTGCGATTATCTGCTGAAACCTGTTAGAATTGAGGAGATACGGAATATTTGGCAGCATGTAATAAGGAGGAAGAAGATTGACTCAAAGGAGAAGAACAAAACCAGCAACCAAGACACACCTAATTCTGATATCCGCAATGGAAGTGGGGCAGCAGCAACAGTGAATTCAGATCAAAATGAAAAGCCATCGAAAAGAATGAAGGATCAGGATGAAGATGATGATGAGGGGCATGAAAATGAGGACGCATCAACCCAGAAGAAGCCTCGAGTTGTTTGGTCTCCGGAGCTGCATCGCAAGTTTGTTGATTCTGTTCATCAATTAGGCGTTGACAAGGCTGTCCCTAAAAAAATTCTTGATTTGATGAATGTTGAAAAGCTAACAAGGGAGAATGTGGCCAGCCATCTCCAGAAATATAGACTTTATCTTAAAAAGTATAGCTCTATGGCAAACCAACAAGCTAATATGGTGGCAGCCTTAGGTGGTGAAGATTCATCCTATATGAGATTGAGTTCTCTGAGTGGTGTTGGACATTTGCAGACATTGAGTGGTTCTAGACAGTGTCATAACAATGCTTTCAGATCCTTTCCACCTGGTGGGATGATTAGTAGATTGAATACTCCTGCTAGTATGAATGTGGATGGTTTGCTTTCTTCAAGAACTCTTCAGTTGGGTCATGCGCAAAAGTTAAACAACTCCACAAATGATCAGCTTAAGTTCCAATCAGCCATAGTTCATGGTAATCAGAATGGTGTTCAGGGAATGCCAATGTCCGTAGGGCTTGACCAATTTCAACACAATAAGGGTGTTGGTCGTATTCAAAACCTGACCACTATTATTGATGCTAAAAAAACTTTTCCCTTCACTAGTAAACTCCCAGATCAAAGACCAAAAGTAACATTGAGTTGCTCACCAGTATTGGATATCTCAAAAAATGCCATGATGTTGGAAGCATATCCTCAAGATAAACAAACAGGTGGAGTATACAATTCACAGTTTTCTCTCCCCTTGTTGGATAATGGAAAGTGCAATGATATTTGGTCTAGTGCTGCCATGCCTCCTACAAATAACATGACTACATCACCCTTGCAAGGAGAGAATCTGAGTGGTGCTTCATCCATCATTCCACTATCCTGTCAACCCCTTGATTCATTGACAAATATGCACTCCCAAGATGTCATTTTTACAAATACTCCTGAGGAAATCAGCAGTAATGCACCATTTCAAGGGTGGGATAACCATAATCAGGAGAGCAGTTACCATTCTCATGTTATTGATAATACAATAGGCTCTATCATTCCTATGAATGCTGCTGTTGATCCTGAAGGCCATAGTCCAATATACTCAACCTTCAACAGAAACTTGGACTTTAAGTTTTGTGATCCGTTACAAATGAAGCAAGATGACATCATTGAATTAAATGAAGAGACCTCGTTGAAACCACATCCGGTACATATAATGAACCAGCATAAGTCTCAAAACAGTTGCATCTCTAATAATCTTGATTCACTGGAAGATGTGGTCAGTGCAATGATAAAACAGAAAAGGTGA 3660 0.409 MGDSKDQFPVGMRVLAVDDDPTCLKVLETLLRRCQYHVTVAKNAIAALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSVNGDPKMVMKGITHGACDYLLKPVRIEEIRNIWQHVIRRKKIDSKERNKSCNKDTPNFDICNERGETATVNSDQNEKPSKKRKDQDEDDDDEGHENGHENEDPSTQKKPRVVWSPELHRKFVEAVHQLGVDKAVPKKILDMMNVEKLTRENVASHLQKYRLYLKKYSSMANQQDNMVAALGGADSSYMRLSSLSGVGHLQTLSSSRQFHNNAFRSFPPGGMISRLNTTASLNVHGLPSSRTLQLGHAQKLNNSTNDQLKFQSAIVHGNQNGVQGMPMSMGLDQLQHNKGVGPIQNLTTLMDAKTTFLITSKLPHQRPKVTLGCSPSPVLDISKNTMKLKANPQDKQVCGVYNSQFSLPVVDNGKCNDVWSSAAMPSTDNMASAPLQGANLSGFSSIIPLSSQPLDSLTNMHSQDVIFTNTPEQISSSAPFQGWDNHNQDGSYHSHVIGSPIGSIIPLNAAVDPNYLDSLEDLILFWVLASAIKQRLYLVQAKTLLRENHHSVEHHKMDDSKDQFPVGMRVLAVDDDPTCLMVLERLLRRCQYHVTVAKNAIAALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSVNGDPKMVMKGITHGACDYLLKPVRIEEIRNIWQHVIRRKKIDSKEKNKTSNQDTPNSDIRNGSGAAATVNSDQNEKPSKRMKDQDEDDDEGHENEDASTQKKPRVVWSPELHRKFVDSVHQLGVDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKKYSSMANQQANMVAALGGEDSSYMRLSSLSGVGHLQTLSGSRQCHNNAFRSFPPGGMISRLNTPASMNVDGLLSSRTLQLGHAQKLNNSTNDQLKFQSAIVHGNQNGVQGMPMSVGLDQFQHNKGVGRIQNLTTIIDAKKTFPFTSKLPDQRPKVTLSCSPVLDISKNAMMLEAYPQDKQTGGVYNSQFSLPLLDNGKCNDIWSSAAMPPTNNMTTSPLQGENLSGASSIIPLSCQPLDSLTNMHSQDVIFTNTPEEISSNAPFQGWDNHNQESSYHSHVIDNTIGSIIPMNAAVDPEGHSPIYSTFNRNLDFKFCDPLQMKQDDIIELNEETSLKPHPVHIMNQHKSQNSCISNNLDSLEDVVSAMIKQKR* 1220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01946 1219 Gene3D - 11 146 - -
Rops9g01946 1219 Gene3D - 608 745 - -
Rops9g01946 1219 SUPERFAMILY CheY-like 11 135 IPR011006 -
Rops9g01946 1219 CDD REC_typeB_ARR-like 611 725 - -
Rops9g01946 1219 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 196 255 IPR017930 -
Rops9g01946 1219 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 788 847 IPR017930 -
Rops9g01946 1219 ProSiteProfiles Response regulatory domain profile. 610 725 IPR001789 GO:0000160
Rops9g01946 1219 MobiDBLite consensus disorder prediction 134 201 - -
Rops9g01946 1219 CDD REC_typeB_ARR-like 14 128 - -
Rops9g01946 1219 Gene3D - 195 257 - -
Rops9g01946 1219 Gene3D - 787 849 - -
Rops9g01946 1219 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 308 IPR045279 GO:0009736
Rops9g01946 1219 SUPERFAMILY Homeodomain-like 196 256 IPR009057 -
Rops9g01946 1219 MobiDBLite consensus disorder prediction 741 763 - -
Rops9g01946 1219 Pfam Response regulator receiver domain 14 122 IPR001789 GO:0000160
Rops9g01946 1219 Pfam Response regulator receiver domain 611 719 IPR001789 GO:0000160
Rops9g01946 1219 Pfam Myb-like DNA-binding domain 201 251 IPR001005 -
Rops9g01946 1219 Pfam Myb-like DNA-binding domain 793 843 IPR001005 -
Rops9g01946 1219 NCBIfam myb-like DNA-binding domain, SHAQKYF class 791 844 IPR006447 GO:0003677
Rops9g01946 1219 NCBIfam myb-like DNA-binding domain, SHAQKYF class 199 252 IPR006447 GO:0003677
Rops9g01946 1219 SMART REC_2 609 721 IPR001789 GO:0000160
Rops9g01946 1219 SMART REC_2 12 124 IPR001789 GO:0000160
Rops9g01946 1219 SUPERFAMILY Homeodomain-like 788 848 IPR009057 -
Rops9g01946 1219 MobiDBLite consensus disorder prediction 732 794 - -
Rops9g01946 1219 ProSiteProfiles Response regulatory domain profile. 13 128 IPR001789 GO:0000160
Rops9g01946 1219 FunFam Two-component response regulator 787 850 - -
Rops9g01946 1219 SUPERFAMILY CheY-like 608 732 IPR011006 -
Rops9g01946 1219 FunFam Two-component response regulator 195 258 - -
Rops9g01946 1219 MobiDBLite consensus disorder prediction 145 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01946 Rops-Chr9 35773160 35788035 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01946 3 378 Response Regulator Gene Family AT2G25180 55.990 5.22e-118 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Rops9g01946 Response_reg 1.1e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01946 - K14491 gmx:100777171 852.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01946 9 35773160 35788035 Rops10g01360 10 26368334 26373429 PCT