Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops9g01943 | ATGGAAAGACTAAGCAAGGAGGCATACCTTTGTGATAGACCAGGCATCTTCTCTGCTCCAGAGGCTCCTCCAAGTCCAAATACCCCATTGCAGAATCCACAGGAAAAGAAGCAGCAATCTGTTGAAGAAGAAGAGGAGACAAAGGTGGATACTTCATTGGATCTGAATGTCTCAAGCAATGATTCTGCTCTTGATTGCAGCCCAGAAGGACCAGAACTCAATCTCATAACTTGTTTGGATGTTGGATCATCTACTAATGCTAATTCATCAGAAAACCCTCTCGGTTCTGATGCAGAACCAAGAGTTTTCTCTTGCAACTACTGCCATAGAAAGTTCTACAGTTCACAAGCACTAGGGGGGCACCAAAATGCCCACAAGAGAGAGAGATCAATAGCAAAAAGAGGGCACAGGTTTGGAACACAGATAATTGCCTCAGCAGCAGCTTTTGGCCTTCCTCTTATGCATAACCAACGCTATGGTGGAAGCATGGCTTCTCTACCCCTTTATGGTGCTTGCAGTAATAAACCTCTTGGAATTCAAGCACACTCCATGATCCACAAGCCTTCTCATACTTCCTCTATTGGATTTGGAAGCCCTTATGCACATCATCATGGTTGGTCAAGACCCCTTATAGATCAACAACCTGGAATAGCAAAGCTAGCTGTGGCAGATTTTCATAGCTCAACATCAGCATTATCATCAAGAAGCAGTGTTGGTAGGTTTGAAGTGGTAGATACTATGATGAATTCTGCAGCTAATAAAGAAATCAGTGGATATCTGGTTAGTAATGGAACTCGTTTGAAGAGTAATAATCAAGAAGAAATGAAGCACCTTGATTTATCCCTCAAGCTTTGA | 855 | 0.4269 | MERLSKEAYLCDRPGIFSAPEAPPSPNTPLQNPQEKKQQSVEEEEETKVDTSLDLNVSSNDSALDCSPEGPELNLITCLDVGSSTNANSSENPLGSDAEPRVFSCNYCHRKFYSSQALGGHQNAHKRERSIAKRGHRFGTQIIASAAAFGLPLMHNQRYGGSMASLPLYGACSNKPLGIQAHSMIHKPSHTSSIGFGSPYAHHHGWSRPLIDQQPGIAKLAVADFHSSTSALSSRSSVGRFEVVDTMMNSAANKEISGYLVSNGTRLKSNNQEEMKHLDLSLKL* | 285 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops9g01943 | 284 | SUPERFAMILY | beta-beta-alpha zinc fingers | 100 | 130 | IPR036236 | - | |
Rops9g01943 | 284 | MobiDBLite | consensus disorder prediction | 1 | 68 | - | - | |
Rops9g01943 | 284 | Gene3D | Classic Zinc Finger | 86 | 147 | - | - | |
Rops9g01943 | 284 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 103 | 130 | IPR013087 | - | |
Rops9g01943 | 284 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 105 | 125 | IPR013087 | - | |
Rops9g01943 | 284 | PANTHER | C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN | 1 | 284 | IPR044246 | GO:0009788 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops9g01943 | Rops-Chr9 | 35708776 | 35709835 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops9g01943 | 25 | 284 | C2H2 Transcription Factor Family | AT5G10970 | 40.293 | 2.38e-43 | 147 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Rops9g01943 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops9g01943 | - | - | lja:Lj5g3v0526470.1 | 354.755 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Rops9g01943 | 9 | 35708776 | 35709835 | Rops10g01361 | 10 | 26388923 | 26389968 | PCT |