Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01943 ATGGAAAGACTAAGCAAGGAGGCATACCTTTGTGATAGACCAGGCATCTTCTCTGCTCCAGAGGCTCCTCCAAGTCCAAATACCCCATTGCAGAATCCACAGGAAAAGAAGCAGCAATCTGTTGAAGAAGAAGAGGAGACAAAGGTGGATACTTCATTGGATCTGAATGTCTCAAGCAATGATTCTGCTCTTGATTGCAGCCCAGAAGGACCAGAACTCAATCTCATAACTTGTTTGGATGTTGGATCATCTACTAATGCTAATTCATCAGAAAACCCTCTCGGTTCTGATGCAGAACCAAGAGTTTTCTCTTGCAACTACTGCCATAGAAAGTTCTACAGTTCACAAGCACTAGGGGGGCACCAAAATGCCCACAAGAGAGAGAGATCAATAGCAAAAAGAGGGCACAGGTTTGGAACACAGATAATTGCCTCAGCAGCAGCTTTTGGCCTTCCTCTTATGCATAACCAACGCTATGGTGGAAGCATGGCTTCTCTACCCCTTTATGGTGCTTGCAGTAATAAACCTCTTGGAATTCAAGCACACTCCATGATCCACAAGCCTTCTCATACTTCCTCTATTGGATTTGGAAGCCCTTATGCACATCATCATGGTTGGTCAAGACCCCTTATAGATCAACAACCTGGAATAGCAAAGCTAGCTGTGGCAGATTTTCATAGCTCAACATCAGCATTATCATCAAGAAGCAGTGTTGGTAGGTTTGAAGTGGTAGATACTATGATGAATTCTGCAGCTAATAAAGAAATCAGTGGATATCTGGTTAGTAATGGAACTCGTTTGAAGAGTAATAATCAAGAAGAAATGAAGCACCTTGATTTATCCCTCAAGCTTTGA 855 0.4269 MERLSKEAYLCDRPGIFSAPEAPPSPNTPLQNPQEKKQQSVEEEEETKVDTSLDLNVSSNDSALDCSPEGPELNLITCLDVGSSTNANSSENPLGSDAEPRVFSCNYCHRKFYSSQALGGHQNAHKRERSIAKRGHRFGTQIIASAAAFGLPLMHNQRYGGSMASLPLYGACSNKPLGIQAHSMIHKPSHTSSIGFGSPYAHHHGWSRPLIDQQPGIAKLAVADFHSSTSALSSRSSVGRFEVVDTMMNSAANKEISGYLVSNGTRLKSNNQEEMKHLDLSLKL* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01943 284 SUPERFAMILY beta-beta-alpha zinc fingers 100 130 IPR036236 -
Rops9g01943 284 MobiDBLite consensus disorder prediction 1 68 - -
Rops9g01943 284 Gene3D Classic Zinc Finger 86 147 - -
Rops9g01943 284 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 130 IPR013087 -
Rops9g01943 284 ProSitePatterns Zinc finger C2H2 type domain signature. 105 125 IPR013087 -
Rops9g01943 284 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 1 284 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01943 Rops-Chr9 35708776 35709835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01943 25 284 C2H2 Transcription Factor Family AT5G10970 40.293 2.38e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops9g01943 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01943 - - lja:Lj5g3v0526470.1 354.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01943 9 35708776 35709835 Rops10g01361 10 26388923 26389968 PCT