Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01939 ATGGCCAGACCACAACAGAGATACCGAGGTGTCCGACAAAGGCATTGGGGTTCTTGGGTCTCAGAGATTCGCCACCCTATATTGAAGACTAGGATATGGCTTGGTACTTTTGAAACAGCTGAGGATGCTGCTAGAGCCTATGATGAAGCAGCTAGACTAATGTGTGGTGTGAGGGCAAGAACAAATTTCCCTTACAACCCAAATGTGTCTCACTCATCATCTTCTTCTTCAAAGCTTCTCTCAGCTACTTTAACTGCTAAACTTCACAGGTGCTACATGGCTTCTTTGCAAATGACTAGGCAATCTTTACCAGAGCCTAAAAGAGTGCCTCAAGTACCAAATGTCATTTCCACAAACACAAGCAACTTCAGTGTGAAAAGTAGTGAAAGTGACACAGTTTCATCACAGAAGGGACCACAGGAGGAGCAAGAACCAGAGGCCAACAGGGTTAAAGCTGAGGATAGTGCTCCTCAACAGTTCAAGCCACTTGAAGAAGATCATATAGAGCAAATGATTGAGGAGCTTCTTGATAATGGGTCTATTGAGCTTTGCTCTTTTAGTTCCAACTCAGGCTCTTTAATTGATTCATAA 591 0.4349 MARPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGVRARTNFPYNPNVSHSSSSSSKLLSATLTAKLHRCYMASLQMTRQSLPEPKRVPQVPNVISTNTSNFSVKSSESDTVSSQKGPQEEQEPEANRVKAEDSAPQQFKPLEEDHIEQMIEELLDNGSIELCSFSSNSGSLIDS* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01939 196 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Rops9g01939 196 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Rops9g01939 196 MobiDBLite consensus disorder prediction 112 141 - -
Rops9g01939 196 MobiDBLite consensus disorder prediction 102 168 - -
Rops9g01939 196 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Rops9g01939 196 Pfam AP2 domain 7 55 IPR001471 GO:0003700|GO:0006355
Rops9g01939 196 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Rops9g01939 196 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 145 - -
Rops9g01939 196 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Rops9g01939 196 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Rops9g01939 196 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Rops9g01939 196 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01939 Rops-Chr9 35592536 35593670 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01939 1 185 AP2-EREBP Transcription Factor Family AT5G25190 65.957 2.20e-76 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Rops9g01939 AP2 8.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01939 - - gmx:100807612 263.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01939 9 35592536 35593670 Rops10g01364 10 26467665 26468631 PCT