Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01934 ATGGCTTACCATAACCAACACATCTCACAAGACCTTCCACTTCACCATTTCACAGACCAATCTAACTCCTTGCGTTCTATATTACCAGACCAACTACCTTCCTCACCCGACCCCAATTCCAAACCTGCCTCCGATCCAAACCAACACCTTCCACTCCAAACCGCACCCAATTGGCTCAACAACGCCCTCCTTCGCACCCACTACGCCGACAATAATAACCACAACGACAACAACAACGACACAAACGTTCACGTTAACGGTAACAACAACGTCTCCAATTTCCTCAACCTCCAGACAGCCTCCGACTCAGCCGCCGCCGCTTCCGCTTCTCAAACATCCGGCCAATGGCTAGCACGACCGATCCTCCACCGTAACCACAGCGAGGTCATCGATGACGCCGTCGCCGGTGAATCCGGCGATTTGAGGGGAGACAGTCTCGGCGGGAAGAGCGAGGCGGTGGTCGGCGACGGAGACGATGTCGGCGGTGGTCTTGTGAACTGGCAGATTGGGAGGTACAAGGCGGATATTCTGGCGCATCCGTTGTATGAACAGTTGTTGTCGGCACACGTGGCGTGCTTACGGATCGCCACGCCGGTGGACCAGTTGCCGAGGATCGATGCTCAGTTAGCACAGTCTCAGAATGTGGTCGCAAAGTACTCTGCGTTTGGACATGGAGCTCAGAACATGGTAGGAGATGACAAAGAGCTCGACCAGTTCATGTCGCACTATGTTTTGTTGCTCTGTTCCTTCAAAGAACAACTGCAACAACATGTCCGGGTCCATGCAATGGAAGCAGTAATGGCTTGCTGGGAGATAGAGCAATCATTACAAAGTTTAACAGGAGTTTCACCTGGAGAAGGTACAGGGGCCACAATGTCTGATGATGAAGATGATCAAGTAGATAGTGATGCCAATCTGTTTGATGGCAGTTTCGATGGCCCAGATAACATGGGATTTGGCCCTCTAATTCCCACAGAGAATGAGAGGTCCCTCATGGAGCGTGTAAGACAAGAATTAAAGCATGAATTGAAACAGGGTTATAAGGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGACGAGCTGGGAAACTTCCTGGTGACACAACCTCTGTCCTCAAGGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACAGAGGAAGATAAGGCAAGGTTGGTGCAGGAAACTGGTTTGCAATTAAAGCAGATTAATAATTGGTTCATCAATCAAAGGAAGAGGAATTGGCACAACAATACTTCAACTTCTACTGTCTTGAAGAGCAAGCGCAAAAGGTGA 1308 0.4954 MAYHNQHISQDLPLHHFTDQSNSLRSILPDQLPSSPDPNSKPASDPNQHLPLQTAPNWLNNALLRTHYADNNNHNDNNNDTNVHVNGNNNVSNFLNLQTASDSAAAASASQTSGQWLARPILHRNHSEVIDDAVAGESGDLRGDSLGGKSEAVVGDGDDVGGGLVNWQIGRYKADILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSAFGHGAQNMVGDDKELDQFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDANLFDGSFDGPDNMGFGPLIPTENERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHNNTSTSTVLKSKRKR* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01934 435 SMART KNOX2_2 226 281 IPR005541 GO:0003677|GO:0005634
Rops9g01934 435 ProSiteProfiles ELK domain profile. 338 358 IPR005539 GO:0003677
Rops9g01934 435 MobiDBLite consensus disorder prediction 26 53 - -
Rops9g01934 435 Pfam ELK domain 338 359 IPR005539 GO:0003677
Rops9g01934 435 SMART HOX_1 360 425 IPR001356 GO:0003677
Rops9g01934 435 SMART ELK_2 338 359 IPR005539 GO:0003677
Rops9g01934 435 Pfam KNOX1 domain 172 213 IPR005540 GO:0003677|GO:0005634
Rops9g01934 435 FunFam homeobox protein knotted-1-like 3 isoform X1 359 420 - -
Rops9g01934 435 Pfam KNOX2 domain 230 280 IPR005541 GO:0003677|GO:0005634
Rops9g01934 435 SMART KNOX1_2 170 214 IPR005540 GO:0003677|GO:0005634
Rops9g01934 435 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 113 420 - -
Rops9g01934 435 CDD homeodomain 361 422 IPR001356 GO:0003677
Rops9g01934 435 ProSiteProfiles 'Homeobox' domain profile. 358 421 IPR001356 GO:0003677
Rops9g01934 435 SUPERFAMILY Homeodomain-like 360 424 IPR009057 -
Rops9g01934 435 Gene3D - 357 431 - -
Rops9g01934 435 Pfam Homeobox KN domain 378 417 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01934 Rops-Chr9 35453174 35458552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01934 1 435 Homeobox Transcription Factor Family AT5G25220 66.079 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Rops9g01934 KNOX2 1.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01934 - - pcin:129303573 649.432