Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01931 ATGGTTGGTCCGAGTAGTGGTAGTAGTTTTGTATTTCATGATATTCAGAGCAGTAATGCTGTTGCTCAGCATACATTTGCTGGTGGTGAGAATGCAAGGGAGTCTTTTTCCTCTAGGGGGCAATGCCATGTTACAAGCCCTGCATCTAGTCTAAACGTTTGCTGCTCAAATATTCAAACTACATCAGAAATGGCTTTAGAACGGTGCTCATCTAAGTATGACACTCCTTTTATGAGAGGGTGTCCTCGTGTGTTCTGCATGGGAAAAAGTGGCTATCTTCTTCTAAGCAATACAGGCCTTGTTGGTATCGTTTGCTCATGCCATTGTTGCCACATGTCTGTCCTTAAGTTTTGTGAGCATTCAGGGTTACATGGTGTCAACCCAGGGGATGCTGTTTGTTTGGAAAGCGGCGAGACCATTGCACAATGGCAGAAGCTGCACTTCTTAAAGTTCGGGATTAGGTCTCCGGGGAATGAAAATGAATGGGACTGGCCAGAAGTATTATCAACAACAGGCAGTATGATGAAATCCAATGCATCTGCATCTGATATGTCCAAGAGTGATTCTTCTCATATTCTGAGTTCATCTGCAGTCACATCAAGAAAACAAATAACAACAATCCAGGATGGTTGCAACATTCCGCTCGGTTTTACTGGAATTTCGCAAAACAAGCTGTATGAACGGGTGAAAAGCCAGTTAATGGAATCTAATCTGGCTGCATATACAACTTCACCGAACTTTGGTGGAACTCAACTAGATGATGGTTGTCAGCCTATGCCTCCTTTCCGTGATTCTCTAAGAAGGAATGGAAATTTGTCAATTGTTCACTCTCCTACACAAACTCGAGCAAGCCTTCTAAAAAACCATGAATGCATGAGAAAGAAAAATGCAAAGGATGGTCTAGTAGGCAGAGATGCCGCTTCCTCTAATATTGAGCTTAGGCTTGGTCAACCACCTCAGACAGGAAATCCAGTTCCATCATTAATAGAACCACCACTGTTTAATGCCCCTGTCATGCCTCCAAAATTGCAACCTCTGAAGCAGATGATTAATAATGCAGACCTCAGCAAGGAGGAGAAATTACAAAATAATTTTAGCTATGCTGCTAGTTCATTGAAAATAGTTGAAGAACCACCTCTGCTTATACCCAGGAACTATATGTCTGGTGTTGGTAATTCTTCAGGTGCTGCTAGAGCTAGATCACAAACCGAAAATGTGGCTAAGAGTTTATTGTTTTCTCCATTTCCCCAATTTAATCCTCAACTGACAAAAACTAGTGAAAATTTCGTGAATGATGGTGGGCGTTTTACGCACCAGAAACTGCATTCTGAATATAGTACCATGCAGTTTGGTCCGACTAATATTCTGTGTAATACTAATGGTCACATAGGAAAGCGATCAAATAATTTTGCACCAGGCTTCAATAAATATTTGGACAACGATAAAGGTGTGAGCTTTGCTAAAGACTGTTGTGCCAAAATAAATTCTGAATCTGGACTTGGTCAGTTAATGGAATTTGGCTCCATCCCAAGAGCTGTTGGTAGTAGTGATAGCTGTATTTCGCCTGTTAATGGAAAGATCTATGAATCAAGCTTGTCATTGGATACATCTGTGGGTGCAAATTTTTTGCAAGGTTCAAAGAATGTTTCGTCTTTTGGACAAGGCAATCACATGACTGCAGGGACAAACATTCCATTTGGAGGAATTTCGAAGGGCCTTCCCTATCTTGTTTCAATCTCTACGGCAAATCAGACTCCTACTTTCCTGCAGCAACGGGACATTAATGTGGATACTTACTTGCCTGATGAAAATATGAGGTTACTTGCATTTTCACAGATACTGGAGTTATCTAAGCAACAACATGCATTGTATTCTCACGATATGACTCAAAAACAAGGGAAATCCAACGATATTTCAAAAACTCAGCACTATATTCATGAGGCTTCAACATCTGAACGATGTATTTCTGGTGCATCCTTGAAATTGCCCCAGCATAGAGGGGATTGTGGGAATGATGAAATCACTGATGGTTTAGACAGACGGGCTTCCTTCACAGGCTTGAACAGATATTGTCTTTCTTCCTTGGAACCAATACCTTCACATTCTAAGGAAGTTGAATCACATTGTAAATGCTCCCATGATCTTCAAAATGATGAGCCATCTTTGAGCCTGGGAATAATGAAAGACAATACCAGATCAAGTGCATATGAAAAATGCTCTGAGCAACCATTAGATACACATTTGGTTGACAAATACACTTGTGCTACTTGGGTAAACTGTTCTGGAAGAAATTTTTACTCAGGATTTGAACCCTCACATTATATCTTAAAACAACATTCTGCAAATGCCAGTGGTGATACTTCTCTGAAGATAGCTTCAAAGTGTGGTAAAGATCTGAATGCTTCAAAGGGTGAAAATACCCACTTCGAGCATGGTGGGAAGTTAGATGGTCAAGGCTCAATCAAAATTGGCCCTCATACACCTCAATGGAGAGACGTGCCAAGTAAGGTCAGGAAAGTAGCTTGTGGTGCAACATCTTTAGATCAGGCAGCTACTGTTTTGGATTGTGAAGGACAAGACAGTGTTCAACTTGGAATAATTTCTGCCAAACGCTTGAAAAGAACTATTGATATGGAAAACATGTCGAAAGAGCAAGAAAATTTTAATGTTTCTTCTGAATGTTCTGATCCTGTGGTTTCTCAGGCATCTGTGGTGGTCAACAAGGTTGATTCTGGTACCATTGATGCTGTAGACACTGGTTGTGTTGACAACCTTGTAGTTGATGAGGGGTCAGGAATTGATAAAGGCTGGTCATCTGATGTGGTTGAAAGTGAAAGAAGTGCTGAATTTCTAGGCTCAACTGGCGGGAGTTATTTGGGAGTCTCAAATGATCAACCATGTCACAACCTCCTTGATGAGCTTAAACTGTTAGATTCTTTGATTTGGAAAAAAAGCCGGGATCAAAATCATATTATGCTTTCTGATAATTGTAAAGCCAATCAATCTCAAAAAGTCAGGAAGGGATTCAAAGGAAAAAAGCGAAAAAGAAATGAGATGATTCTGGATGCAGCTTTACCTTCTGAGATCCCTTCCTTATTGCATAATGCGAATGGTGAAAGCACTGGAGTTTTTAGTACCCCTTCCAGTTTGTCCAAAGAAATACAAATGTACTTTTCATCTAGCCAGCTAAGATCATCTAACAAGGCTTCTTTTGCTCAACCTGGTGCCAAACAAAGACACACTGCTTTTTCATCCAAATTTCTCTCTTGTAAGAATCATCTAAGCAAGCACCTTAGTGACAAAGCTAGTTATGAGTCAGAATCAAATACTGATGCTGGGTTTCACACATTGCCTGAAGTTTCTGCAATGAAGAAATTAAGAAAGGATTTCACTTCTGATTGTTTTGGGGATTTTCAAATGCAAGAACTATGCTATATGGAACTTGAAGATGCTAAGCTGAGGTCATTCTCTTGCAGGAAGGCAAATGCTCATAGAGTCACCAAGCCAGTAGTATGCGGAAAATATGGTGAAATATCCAATGGACAAATGGCTAGTGAAGTACCAAAACCAGCAAAAATTGTCTCTCTTAGCAAGATTCTTAAAACATCGAAAAGATGTATGGTCCCTACAAATGGCAAATCTAGATTAACTTCAAAAAAGAAATGGAAGAGATTGAGCTTTGGAACAAGTAGCGGGCACTGCTGCAGCAAACTTGGTTTAAAAACCAAGGAAGATAATGAAACCCAAAATACAATAAATTGTGAAGCAAATGTTTGTGTGTCAATGGAAGATTTGGAGAGGGGCAAGCCACATGTGATTTACAAAGGAAAGAGAAATACCAAATTTAGGCAGGGTGATAGTATTGTAAATAGAGCTGATGCTCTGTTGAAGGTGAAAAGCAAGGAAATTCGGAAACAGCGTAGCATTAATGAACTCACCGCTAAAGAAACCAAAATGAAGGATATTTTAAAGTATGATGAAGATAGGGAGCATGGTTTGTGTAACACAAGAAGTAGAAACTCTGTTCAAGAACACACAAGCATATCTATCATAAATTCAGATACTTTCTGCTGTGTATGTCGAAGCTCAAGCAATGATAAAATTAACTGTTTGTTGGAATGTAGTAAATGTCTAATTAGAGTACATCAGGCTTGCTATGGTATTTCCACTTTACCTAAAAAAGGACGTTGGTGTTGCAGACCATGCCGAACAAACTCTGCAGATATTGCCTGTGTCCTATGTGGTTATGGAGGTGGAGCCATGACTCGAGCGTTACTGAGTCACACAATCATAAAAAGCCTCTTAAAAGTGTGGAATATTGATAAGGAAGTAGATGCATTTCATTCCTCAAAATTTGGACTACAAGTTGACCAAAATTATGGGTTAAGGCCTGAAATTGTTGATATGTCAACAGCAGATCTTTTGAAGGTTGAGATGTCTACAAATCACATACAACACTCCTCGTGCTGTGTTACTAATTTTAAGGTACATAACAGCATTACAGCTGGAGTTTTTGATACGACTGTTAAGCAGTGGGTTCATATGGTTTGTGGGCTTTGGACTCCTGGCACAAGATGCCCTAATGTTGATACCATGAATGCTTTTGATGTATCTGGCGTTTCACGTCCTAGAGCAGATGTGGTCTGCTCCATTTGCAATCGATTGGGTGGTTCTTGTATAGAGTGCAGGATTGTTGATTGCTCTGTCAAGTTTCATCCTTGGTGTGCTCATCAGAAGAACCTGTTGCAAAGTGAGACTGAAGGTGTTAACGAGGAGAAAATTGGATTTTATGGAAGGTGTGCGCTTCATGCTATGGACCCCGGATGTCAATCCACATATGATCCTATCAATGAAATGAGCTGTCAAGAAGAAAAGGAATTCTCCTGTGCCAGGACAGAAGGTTACAAAGGCCGTAGATGGGATGGTTTACAGAATAATCGTTACAGTGCCTTGAAAGCCAAAGGGGGATGCCTTGTTCCTGAGGAACAGTTAAATGCTTGGATTCACATGAATGGACAGAAATTATGTTCACTGGGACTCCCAAAATTTCTAGATTCAGATATTGAGCATGATTGTCGGAAGGAATATGCAAGGTACAAGCAAGCCAAGGGTTGGAAACACCTTGTTGTATATAAATCTGGGATACATGCTCTTGGTCTTTACACTTCTTGGTTCATTTCCCGAGGTGAAATGGTTGTTGAGTATGTTGGTGAAATTGTGGAGCAACGTGTGGCTGATAAAAGAGAAAATGAATATCATTCAGGAAGGAAGGTTCAGTACAAGAGTGCCTGCTACTTCTTTAGGATAGACAAAGAACATATAATTGATGCCACAAGGAAAGGGGGGATTGCTCGATTTGTTAACCACTCATGCCTGCCAAATTGTGTGGCAAAAGTGATTACAGTAAGGCATGAGAAGAAGGTTGTCTTCTTTGCAGAGAGGGACATATTTCCTGGTGAAGAGATTACGTACGATTACCACTTTAACCACGAAGATGAAGGAAAGAAGATTCCATGTTACTGCAATTCAAAAAATTGCAGGCGCTATTTGAACTGA 5556 0.4017 MVGPSSGSSFVFHDIQSSNAVAQHTFAGGENARESFSSRGQCHVTSPASSLNVCCSNIQTTSEMALERCSSKYDTPFMRGCPRVFCMGKSGYLLLSNTGLVGIVCSCHCCHMSVLKFCEHSGLHGVNPGDAVCLESGETIAQWQKLHFLKFGIRSPGNENEWDWPEVLSTTGSMMKSNASASDMSKSDSSHILSSSAVTSRKQITTIQDGCNIPLGFTGISQNKLYERVKSQLMESNLAAYTTSPNFGGTQLDDGCQPMPPFRDSLRRNGNLSIVHSPTQTRASLLKNHECMRKKNAKDGLVGRDAASSNIELRLGQPPQTGNPVPSLIEPPLFNAPVMPPKLQPLKQMINNADLSKEEKLQNNFSYAASSLKIVEEPPLLIPRNYMSGVGNSSGAARARSQTENVAKSLLFSPFPQFNPQLTKTSENFVNDGGRFTHQKLHSEYSTMQFGPTNILCNTNGHIGKRSNNFAPGFNKYLDNDKGVSFAKDCCAKINSESGLGQLMEFGSIPRAVGSSDSCISPVNGKIYESSLSLDTSVGANFLQGSKNVSSFGQGNHMTAGTNIPFGGISKGLPYLVSISTANQTPTFLQQRDINVDTYLPDENMRLLAFSQILELSKQQHALYSHDMTQKQGKSNDISKTQHYIHEASTSERCISGASLKLPQHRGDCGNDEITDGLDRRASFTGLNRYCLSSLEPIPSHSKEVESHCKCSHDLQNDEPSLSLGIMKDNTRSSAYEKCSEQPLDTHLVDKYTCATWVNCSGRNFYSGFEPSHYILKQHSANASGDTSLKIASKCGKDLNASKGENTHFEHGGKLDGQGSIKIGPHTPQWRDVPSKVRKVACGATSLDQAATVLDCEGQDSVQLGIISAKRLKRTIDMENMSKEQENFNVSSECSDPVVSQASVVVNKVDSGTIDAVDTGCVDNLVVDEGSGIDKGWSSDVVESERSAEFLGSTGGSYLGVSNDQPCHNLLDELKLLDSLIWKKSRDQNHIMLSDNCKANQSQKVRKGFKGKKRKRNEMILDAALPSEIPSLLHNANGESTGVFSTPSSLSKEIQMYFSSSQLRSSNKASFAQPGAKQRHTAFSSKFLSCKNHLSKHLSDKASYESESNTDAGFHTLPEVSAMKKLRKDFTSDCFGDFQMQELCYMELEDAKLRSFSCRKANAHRVTKPVVCGKYGEISNGQMASEVPKPAKIVSLSKILKTSKRCMVPTNGKSRLTSKKKWKRLSFGTSSGHCCSKLGLKTKEDNETQNTINCEANVCVSMEDLERGKPHVIYKGKRNTKFRQGDSIVNRADALLKVKSKEIRKQRSINELTAKETKMKDILKYDEDREHGLCNTRSRNSVQEHTSISIINSDTFCCVCRSSSNDKINCLLECSKCLIRVHQACYGISTLPKKGRWCCRPCRTNSADIACVLCGYGGGAMTRALLSHTIIKSLLKVWNIDKEVDAFHSSKFGLQVDQNYGLRPEIVDMSTADLLKVEMSTNHIQHSSCCVTNFKVHNSITAGVFDTTVKQWVHMVCGLWTPGTRCPNVDTMNAFDVSGVSRPRADVVCSICNRLGGSCIECRIVDCSVKFHPWCAHQKNLLQSETEGVNEEKIGFYGRCALHAMDPGCQSTYDPINEMSCQEEKEFSCARTEGYKGRRWDGLQNNRYSALKAKGGCLVPEEQLNAWIHMNGQKLCSLGLPKFLDSDIEHDCRKEYARYKQAKGWKHLVVYKSGIHALGLYTSWFISRGEMVVEYVGEIVEQRVADKRENEYHSGRKVQYKSACYFFRIDKEHIIDATRKGGIARFVNHSCLPNCVAKVITVRHEKKVVFFAERDIFPGEEITYDYHFNHEDEGKKIPCYCNSKNCRRYLN* 1852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01931 1851 SUPERFAMILY FYVE/PHD zinc finger 1349 1403 IPR011011 -
Rops9g01931 1851 SMART PostSET_3 1835 1851 IPR003616 -
Rops9g01931 1851 CDD ePHD 1506 1603 - -
Rops9g01931 1851 ProSiteProfiles Extended PHD (ePHD) domain profile. 1484 1604 IPR034732 -
Rops9g01931 1851 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1341 1416 IPR013083 -
Rops9g01931 1851 ProSiteProfiles Zinc finger PHD-type profile. 1354 1405 IPR019787 -
Rops9g01931 1851 Pfam PHD-zinc-finger like domain 1507 1585 - -
Rops9g01931 1851 PANTHER HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER 582 1851 - -
Rops9g01931 1851 SMART PHD_3 1548 1604 IPR001965 -
Rops9g01931 1851 SMART PHD_3 1356 1403 IPR001965 -
Rops9g01931 1851 Gene3D SET domain 1603 1851 IPR046341 -
Rops9g01931 1851 SMART set_7 1706 1833 IPR001214 GO:0005515
Rops9g01931 1851 Pfam PHD-finger 1369 1403 - -
Rops9g01931 1851 Pfam SET domain 1719 1826 IPR001214 GO:0005515
Rops9g01931 1851 SUPERFAMILY SET domain 1695 1851 IPR046341 -
Rops9g01931 1851 CDD SET_SETD1-like 1708 1847 - -
Rops9g01931 1851 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1483 1602 IPR013083 -
Rops9g01931 1851 ProSiteProfiles Post-SET domain profile. 1835 1851 IPR003616 -
Rops9g01931 1851 Pfam Tify domain binding domain 100 145 IPR032308 -
Rops9g01931 1851 ProSiteProfiles SET domain profile. 1706 1827 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01931 Rops-Chr9 35400712 35417280 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01931 1708 1851 C2H2 Transcription Factor Family AT2G23740 34.756 3.34e-17 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Rops9g01931 SET 6.8e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01931 - - gmx:100812602 2532.67