Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01928 ATGGGGAAACCTGCGGGGAAGAAGAAGGATCATGAAACTTCTAAGGCTACCGATGGTAACAAGAAGAATTGGGACCGTTCATCATCGAAAGCTTTAGATGATGACACGGCCATGTTCATCAACATGTCACAGGAGCTTCGAGAAGAAGGTAATAAACTCTTCCAGAAGAAGGACAACGAAGGTGCTATGTTAAAGTACGAAAAAGCCCTCAAGCTTCTTCCCAGGAACCACATCGATATGGCACATCTCCACACCAACATGGCCGTTTGTTACATGCAATTGGGACTCGGAGAATACCCTCGTGCCATCAACGAGTGCAATTTAGCGTTACAGGTTCATCCGCGTTATAGCAAGGCTCTTCTCAAGAGAGCCAAGTGTTATGAAGCTTTGAATCGGTTGGATTTGGCCATGAGGGATGTTCGTGTTGTGTTGAACTCGGAACCCAATAATCTAACCGCTTTGGAGATTCTAGATAGTTTGAGAAGGACCATGGATGAGAAAGGAATCACGATAGATGAAACTGAGATCGCTTTGGCGACTTTACAGCAGCAGGAGCCACCCACAGCACGGTTGCGGAAAGTTGTGAGGGAGAAGCTGAAGAAAAAGAAAGGACAGAAACCGGAACAAGAAAAAGAAACCCCGAAAAAATCGAATCTTGAGAATGATAAGAGTGTTAAGGATAAGGATGTTAAGGATGAGGATGTTAAGGATCAAGATAAGGATGATAAAGAATTTGTTAAGGACGATAAAGATAAAGGGGTTACTAGGACGGTGAAGTTGATATATGGAGAGGATATAAGATGGGCACAATTGCCTGTGAATTGTAGTATGAAGTTGGTGAGGGATGTGATAAGGGATAGGTTTCCGGGGTTAAAGGGTGTGCTTGTTAAGTATAGGGATAGGGAAGGTGATTTGGTTACTATTACTACTACTGCTGAATTGAGGTTAGCTGAGACTTGTCATGTGCTTGGGTCAATTAGGCTTTATGTTACTCAAGTGAATCTGGATCAGGAACCGTGTTATGATGAAACAAAAACAACAAGTGATGGTGGGGTGAAGATGGAGAATGGGGATGCGGAAGGAGGAGGCAGAGGTGGGGGTAATAGGCAGACTACTGTGGAGGATTGGCTTGTACAGTTTGCAAGGTTGTTTAAGAACCATGTTGGGTTTGATTCTGATGTGTATTTGGATATTCATGAGGTTGGAATGAAGCTATATTCGCAAGCAATGGAGGATACAGTGACGAGTGATGGTGCTCAAGAGCTGTTTGATATTGCTGCTGATAGATTTCAAGAGATGGCTGCTCTGGCTTTGTTTAATTGGGGGAACGTTCACATGTCCAAGGCGCGGAGGAGGGTGTCTTTTCCTGAGGATGGTTCAAGAGAAGCTTCATTTGAGCATATTAAAGCTGCTTATGATTGGGCTCAGAAGGAGTACAAGGAAGCAGAAAAGATATATGAAGAAGCTGTGAAAATCAAACCGGACTTTTATGAAGGACTTCTCGCTCTCGGGTATCAGCAGTTTGAACAAGCAAAGCTCTGCTGGTGTTATTTAATTTCACAGAAGAAGGATTTGGAAGTAGGCCATTCTGAGGAGGTTCTGCAGCTCTATAACAAGGCAGAGGATAGCATGGAGAAAGGCATATTGATGTGGGAGGAGATTGAGGAGCAGCGTTTGAATGGACTGTCCAAATCAGATAAATATAATGCACAGCTAGAGAAAATGGGTCTGCACGGTCTTTTCAGGGATGTTTCTACTGATGAAGCTGAAGAGCAGGCTGCAAAGATGAGGATACAAATATATCTTTTATGGGGCACCTTATTGTATGAGCGTTCTGTTGTGGAATATAAGCTAGGTTTACCAACATGGGAGGAATGTTTGGAGGTGTCAGTTGAAAAGTTTGAACTAGCTGGTGCTTCTACAACTGACATTGGTGTCATGATAAAGAACCATTGTTCGAATGAAACAGCAATGGAAGGGTTCAAAATTGATGAGATAGTGCAAGCATGGAATGAGATGTATGATGGGTGGCAGTTTGATGTTCCAACATTTCGACTTGAACCATTGTTTCGTCGGCGTTCTCCAAAACTCCATTACATCCTGGAGCAGTTTTAA 2115 0.4317 MGKPAGKKKDHETSKATDGNKKNWDRSSSKALDDDTAMFINMSQELREEGNKLFQKKDNEGAMLKYEKALKLLPRNHIDMAHLHTNMAVCYMQLGLGEYPRAINECNLALQVHPRYSKALLKRAKCYEALNRLDLAMRDVRVVLNSEPNNLTALEILDSLRRTMDEKGITIDETEIALATLQQQEPPTARLRKVVREKLKKKKGQKPEQEKETPKKSNLENDKSVKDKDVKDEDVKDQDKDDKEFVKDDKDKGVTRTVKLIYGEDIRWAQLPVNCSMKLVRDVIRDRFPGLKGVLVKYRDREGDLVTITTTAELRLAETCHVLGSIRLYVTQVNLDQEPCYDETKTTSDGGVKMENGDAEGGGRGGGNRQTTVEDWLVQFARLFKNHVGFDSDVYLDIHEVGMKLYSQAMEDTVTSDGAQELFDIAADRFQEMAALALFNWGNVHMSKARRRVSFPEDGSREASFEHIKAAYDWAQKEYKEAEKIYEEAVKIKPDFYEGLLALGYQQFEQAKLCWCYLISQKKDLEVGHSEEVLQLYNKAEDSMEKGILMWEEIEEQRLNGLSKSDKYNAQLEKMGLHGLFRDVSTDEAEEQAAKMRIQIYLLWGTLLYERSVVEYKLGLPTWEECLEVSVEKFELAGASTTDIGVMIKNHCSNETAMEGFKIDEIVQAWNEMYDGWQFDVPTFRLEPLFRRRSPKLHYILEQF* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01928 704 PANTHER PROTEIN CLMP1 1 702 IPR044517 -
Rops9g01928 704 SUPERFAMILY TPR-like 419 549 IPR011990 GO:0005515
Rops9g01928 704 Gene3D - 245 332 - -
Rops9g01928 704 SMART PB1_new 255 333 IPR000270 GO:0005515
Rops9g01928 704 CDD PB1 257 330 - -
Rops9g01928 704 Gene3D Tetratricopeptide repeat domain 403 575 IPR011990 GO:0005515
Rops9g01928 704 SMART tpr_5 43 76 IPR019734 GO:0005515
Rops9g01928 704 SMART tpr_5 463 496 IPR019734 GO:0005515
Rops9g01928 704 SMART tpr_5 81 116 IPR019734 GO:0005515
Rops9g01928 704 SMART tpr_5 117 150 IPR019734 GO:0005515
Rops9g01928 704 MobiDBLite consensus disorder prediction 341 368 - -
Rops9g01928 704 MobiDBLite consensus disorder prediction 197 245 - -
Rops9g01928 704 ProSiteProfiles PB1 domain profile. 255 333 IPR000270 GO:0005515
Rops9g01928 704 ProSiteProfiles TPR repeat profile. 43 76 IPR019734 GO:0005515
Rops9g01928 704 MobiDBLite consensus disorder prediction 201 245 - -
Rops9g01928 704 Pfam PB1 domain 255 332 IPR000270 GO:0005515
Rops9g01928 704 SUPERFAMILY CAD & PB1 domains 255 345 - -
Rops9g01928 704 SUPERFAMILY TPR-like 40 163 IPR011990 GO:0005515
Rops9g01928 704 Gene3D Tetratricopeptide repeat domain 41 170 IPR011990 GO:0005515
Rops9g01928 704 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01928 Rops-Chr9 35354873 35359384 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01928 18 150 Calmodulin-binding Proteins AT3G25230 27.465 2.13e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01928 K26538 - zju:107421160 902.508