Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01905 ATGGTACAAGCAAAGAAGTTCAGAGGAGTGAGACAGCGCCAGTGGGGCACCTGGGTGTCAGAAATTCGTCACCCATTATTGAAGAGAAGGGTATGGCTTGGTACATTTGAGACAGCAGAGGCTGCAGCAAGGGTATATGATCAAGCAGCCATTTTGATGAGTGGTAAAAATGCCAAGACCAATTTCCCTACACCAAAGGATCAACTTGAAGGTGGTGCCACTCCTAATTGTGATGATTCTTTCTTCTCTCCCAAGGCACTTTCTGATCTTCTGAACCAAAAGCTTAGAAAGTGCTGCAAAGACCCATCTCCATCCCTCACTTGTTTGAGGCTTGATACTGACAATTCCCACATAGGAGTGTGGCAAAAAGGAGCAGGACCACATTCAGACTCAAATTGGATCATAAGGGTGGAGCTTGGGAAGAAACATGAAGAGGGTGAGTCAAGTGTGTCATTGGAATCAGCATCAAACACAGTTGAAGATGGTGGAAATGAGGTAGATGAAGAAGACAGACTTACCATGCAGATGATTGAAGAGCTACTTAATTAG 549 0.4463 MVQAKKFRGVRQRQWGTWVSEIRHPLLKRRVWLGTFETAEAAARVYDQAAILMSGKNAKTNFPTPKDQLEGGATPNCDDSFFSPKALSDLLNQKLRKCCKDPSPSLTCLRLDTDNSHIGVWQKGAGPHSDSNWIIRVELGKKHEEGESSVSLESASNTVEDGGNEVDEEDRLTMQMIEELLN* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01905 182 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Rops9g01905 182 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Rops9g01905 182 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Rops9g01905 182 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Rops9g01905 182 Gene3D AP2/ERF domain 5 64 IPR036955 GO:0003700|GO:0006355
Rops9g01905 182 MobiDBLite consensus disorder prediction 144 169 - -
Rops9g01905 182 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 131 - -
Rops9g01905 182 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Rops9g01905 182 CDD AP2 5 63 IPR001471 GO:0003700|GO:0006355
Rops9g01905 182 Pfam AP2 domain 6 53 IPR001471 GO:0003700|GO:0006355
Rops9g01905 182 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01905 Rops-Chr9 34669982 34671414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01905 1 182 AP2-EREBP Transcription Factor Family AT5G25390 59.890 2.67e-73 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops9g01905 AP2 2.8e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01905 - - lang:109326202 273.863