Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01902 ATGATGTTGTGCTTCAAGAGATCAAATAGGACCCGCTCCAAGACTACTAACATCATTGATTGTCCTTTGAGAAAGAGATTTACATGGGTCACTCCCAAGGCGCACGACAAAATCCTCACCTCCACTGCCATCGTCTCCATTAACCACTTCAACACCTTCTCCTTGTCATCTTCAACCACCTTGATAATGCCAAACAGCACATTAGTGACACTACCTGGTCACTCTATGAGGACGAGGAAGAGTGGTTGTCTACACCTGTTAGAGCTTACTCTATTTGGATTTGCTTCAGATCCGTTACTTTGTTGGATAATGGGAGAAACAAAGGACGAAGGATACGAGGAGGAGCTTCTTGACTATGAAGAGGAAGAGGACAAGGCACCCGACGCTGTTGGAACTAAAGTCAACGGTGAAGCTGCCAAGAAGGGCTATGTTGGGATTCACAGCTCAGGATTCAGAGACTTTCTCTTGAAGCCAGAGCTTCTTCGGGCTATTGTTGACTCAGGATTTGAACATCCTTCGGAAGTGCAACACGAGTGCATACCTCAAGCAATTCTTGGAATGGATGTAATTTGTCAAGCTAAATCTGGAATGGGAAAAACTGCTGTCTTTGTTCTCTCAACTTTGCAGCAGATTGATCCTGTTGCAGGCCAAGTTTCAGCTCTTGTTCTGTGTCACACAAGGGAATTGGCCTACCAGATATGCCATGAGTTTGAGAGGTTCAGCACCTACTTGCCTGATCTCAAGGTTGCTGTCTTTTATGGTGGTGTCAACATTAAAGTTCACAAGGATCTGTTAAAAAATGAATGCCCTCATATTGTTGTTGGTACGCCTGGAAGAATACTAGCGTTGGCCAGGGATAAGGAGCTTTCTTTGAAGAATGTTAGGCATTTCATCTTGGATGAATGTGATAAGATGCTGGAATCACTGGACATGAGGAAAGATGTGCAAGATATTTTCAAGATGACTCCCCATGATAAGCAAGTTATGATGTTTTCTGCCACACTCAGCAAGGAAATCCGCCCCGTCTGCAAAAAATTTATGCAAGATCCAATGGAAATCTATGTCGACGATGAAGCAAAGTTGACTCTTCATGGACTTGTGCAGCACTACATCAAATTGAAAGAGGAGGAGAAGAACAGGAAGTTGAATGATCTTCTTGATGCACTGGACTTCAATCAAGTTGTTATCTTTGTGAAAAGTGTCAGTAGAGCAGCTGAGCTGGACAAACTTCTTGTGGAGTGCAATTTTCCATCTATATGCATTCATTCTGGAATGTCCCAGGAAGAAAGGTTAAAGCGTTATAAAGGTTTTAAGGAGGGGCATACAAGGATTCTTGTGGCAACAGATTTGGTTGGTAGGGGAATTGACATTGAACGTGTGAATATAGTCATAAACTATGACATGCCTGATTCTGCAGATACTTACTTGCACAGGGTTGGCCGAGCTGGAAGGTTTGGCACCAAAGGCCTTGCAATCACATTTGTTTCATGTTCTACTGACGTTGATGTTCTGAACAATGTTCAGTCCAGGTTTGAGGTGGATATAAAGCAGCTTCCTGAGCAGATTGATACATCTACCTACATGCCATCATAG 1593 0.4319 MMLCFKRSNRTRSKTTNIIDCPLRKRFTWVTPKAHDKILTSTAIVSINHFNTFSLSSSTTLIMPNSTLVTLPGHSMRTRKSGCLHLLELTLFGFASDPLLCWIMGETKDEGYEEELLDYEEEEDKAPDAVGTKVNGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALARDKELSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSTDVDVLNNVQSRFEVDIKQLPEQIDTSTYMPS* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01902 530 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 365 526 IPR001650 -
Rops9g01902 530 FunFam DEAD-box ATP-dependent RNA helicase 56-like 137 355 - -
Rops9g01902 530 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 180 353 IPR014001 -
Rops9g01902 530 Gene3D - 362 529 IPR027417 -
Rops9g01902 530 FunFam DEAD-box ATP-dependent RNA helicase 362 530 - -
Rops9g01902 530 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 218 500 IPR027417 -
Rops9g01902 530 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 149 177 IPR014014 GO:0003724
Rops9g01902 530 Pfam DEAD/DEAH box helicase 174 339 IPR011545 GO:0003676|GO:0005524
Rops9g01902 530 Gene3D - 145 361 IPR027417 -
Rops9g01902 530 CDD DEADc_DDX39 148 355 - -
Rops9g01902 530 SMART ultradead3 168 369 IPR014001 -
Rops9g01902 530 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 148 504 - -
Rops9g01902 530 Pfam Helicase conserved C-terminal domain 379 486 IPR001650 -
Rops9g01902 530 SMART helicmild6 405 486 IPR001650 -
Rops9g01902 530 CDD SF2_C_DEAD 366 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01902 Rops-Chr9 34640377 34651341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01902 104 530 Eukaryotic Initiation Factors Gene Family AT5G11200 82.729 0.0 755
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01902 K12812 - gmx:100808957 822.002