Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01885 ATGAAGATGTTTGGAAAGTCTTGTGGTGGTGGCCACAAGAAGAAGGAAGAAGAAGAAGAAGCAAATGAGAAAAAGAATCATAATAAGGAAGATGACAGCCAATACAGCCTCACCGGCATCCTTCTTCCTTCTCTTGGTGCAACCTCCATTCGCGGCAGCCGGAAACATAAGCTCCGCCCTTACATTATCTCACCATACCATCATCATTACAAACTGTGGAACAAGTTTCTATTGATGTTGGTTTTCTACACTGCATGGGTATGTCCTTTTGAATTTGGGTTTCTGGAGAAATCAAAGGGTATATTTGGTATAACAGACAACATTGTGAACGGGATTTTTGCCATTGACATTGTTCTCACCTTCTTCGTTTCCTACCTTGACAAAGCTTCTTATTTACTCATTGACAACCCAAAGCTCATTGCTTTGAGATATGCTAAATCATGGTTGATCTTGGATATTATCTCTTGCATCCCTTTTGAAGTTGTTCACATTATGTTACCACCTAATCTCCAAGAATATGGCTACTTCAACATTCTCCGCCTTTGGCGCCTTCATAGAGTCGGTGCTATGTTTGCAAGATTAGAAAAGGATAGGAATTATAACTACTTCTGGGTGCGCTGTTCAAAACTTACATGTGTAACTCTATTCTCGGTGCATGCTGGTGCCTGCTTTTTTTATTTTCTTGCTCAACGGCATGAGCTCAAATCTTCATGGCTTTCACTTGTCTCTAATGTCTCTCACCAGAGACTATGGGACCGTTATGTAACATCAGTATATTGGTCCATAGTGACTCTTGCATCAATTGGTTATGGTGATCTACATCCAGTAAATACAACTGAAATGATATTTGACATTTTGTATATGCTATTTAATCTTGGACTTGATGCATATTTGATAGGAAACATGACCAACTTGGTTGTCCACTGGACAGATAGAACTAAGAGATATAGAGAGACTGTCCAATCTGCCTCAAATTTTACCCAAAGGAATCAATTACCAGTTCGTTTGCAAGAACAAATATTTGCTAATTTGCTTATGAAGTACAGAACAGATTTAGAAGGATTACAGCATCAGGAGATCATTGATTCCCTTCCAAAAGCCATTCAGTCTAGCATCTCACTCTACCTATTCCATCCCCTAATCGACAAAGTGTACTTGTTTAATGGAGTGTCAAATGACCTACTTTTTCAACTGGTCGCAGAGATGAAGGCCGAGTATTTTCCTCCAAAGGAAGATGTGATTTTGCAAAATGAAGCACCGACGGACTTTTATATAATGGTTACTGGAGCTGCTGATCTTATCATTCAAGGGAATGGAAAAGAACAGGTTATTGGTGAGGTAAAGACAGGAGATGTTGTAGGGGAAATTGGAGTGTTATGTTACAGGCCACAACCGTTTACAGTTCGGACCAAGCGATTGAGCCAGCTTCTGCGATTGAATCGAACAACATTGCTAAATCTTGTTAATTCAAATGTCGGAGATGGAACCATAATCATGAACAATTTTCTTCAGCATTTGCGTAAATCAGAGAATCCAGGGATGGGAGGAATTTTGGCTGAAATAGAGGCATTGCTAGCTCGAGGCAAAATGGATTTGCCAATCAGCTTACTGTATGCGGCTAGCAGAGGTGATGATATATTGTTGCATCAATTGCTGAGGAAGGGTTCAGATCCAAATGAAACAGATAAGGATGGAAAGACAGCACTGCATATTGCAGCTTCTAAAGGCAGTGTTCATTGTGTAGTTCTGCTTCTGGAATATGGGGCTGATCCCAACATTCAAGATTTAGATGGAAGTGTCCCATTATGGGAAGCAATTAAAGGTGGGCATGAATCAATCATGACACTACTTGTAGACAATGGTGCAGATGTAGACCATCTTGCATGCGTTGCTATTGAGAAAAATAACATAGAATTGCTCAAGGACATCATTCAATGTGGTGGGGATGTGACACAATCCACAAGTAATGGAATCACTCCACTCCATGCAGCAGTGTGTGAAGGAAACGTTGAAATAGTTAAGTTCCTTGTAGAACAAGGAGCCGACATTAATAAGCAAGATGGTAATGGTTGGACTCCAAGGGAATTTGCAGATCATCAATGCCAAGAAGAAATACAAAAGATATTCCAGAGAATTGGAATGAACAAAACACCACATGTTATTCCTCCAACATCAAAGAATGGAGGGCCCTTTGTTGGAAAGAGTCAAAGTGAACCCTTTATGCCAGTCATTCCCCATGGTAGCATACCACCTAATCAAGATTTGACATGGTTGGATATTCGTGAGAGAAGAAGGGTCAGCCCTTTTCATAATTCCTTTTTTGGGATCATGTCAGCTGCCAATCGAGATGAATATGATTCCACTGCATCTCAAAGCAGTAGCATTACTACTGCAGACGTGAATGAATTATCTGTCAGAGTAACGCTTTGTTGTCCAAAAAAGGGTGAACGAGCTAAAAAACTTGTTTTTCTACCAAACTCCCTTCAAGAACTGCTACATATTGGTGCCACAAAGTTTGATTTTTCTCCCACTAAAATTTTGACCAAAGAAGGAGCTGTAGTTGAAGACATAAACTTGATTAGAGATGGTGATCATCTTATTCTTGCATGA 2610 0.4 MKMFGKSCGGGHKKKEEEEEANEKKNHNKEDDSQYSLTGILLPSLGATSIRGSRKHKLRPYIISPYHHHYKLWNKFLLMLVFYTAWVCPFEFGFLEKSKGIFGITDNIVNGIFAIDIVLTFFVSYLDKASYLLIDNPKLIALRYAKSWLILDIISCIPFEVVHIMLPPNLQEYGYFNILRLWRLHRVGAMFARLEKDRNYNYFWVRCSKLTCVTLFSVHAGACFFYFLAQRHELKSSWLSLVSNVSHQRLWDRYVTSVYWSIVTLASIGYGDLHPVNTTEMIFDILYMLFNLGLDAYLIGNMTNLVVHWTDRTKRYRETVQSASNFTQRNQLPVRLQEQIFANLLMKYRTDLEGLQHQEIIDSLPKAIQSSISLYLFHPLIDKVYLFNGVSNDLLFQLVAEMKAEYFPPKEDVILQNEAPTDFYIMVTGAADLIIQGNGKEQVIGEVKTGDVVGEIGVLCYRPQPFTVRTKRLSQLLRLNRTTLLNLVNSNVGDGTIIMNNFLQHLRKSENPGMGGILAEIEALLARGKMDLPISLLYAASRGDDILLHQLLRKGSDPNETDKDGKTALHIAASKGSVHCVVLLLEYGADPNIQDLDGSVPLWEAIKGGHESIMTLLVDNGADVDHLACVAIEKNNIELLKDIIQCGGDVTQSTSNGITPLHAAVCEGNVEIVKFLVEQGADINKQDGNGWTPREFADHQCQEEIQKIFQRIGMNKTPHVIPPTSKNGGPFVGKSQSEPFMPVIPHGSIPPNQDLTWLDIRERRRVSPFHNSFFGIMSAANRDEYDSTASQSSSITTADVNELSVRVTLCCPKKGERAKKLVFLPNSLQELLHIGATKFDFSPTKILTKEGAVVEDINLIRDGDHLILA* 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01885 869 PANTHER POTASSIUM CHANNEL AKT1 33 868 IPR045319 GO:0005249|GO:0006813
Rops9g01885 869 ProSiteProfiles Ankyrin repeat profile. 564 596 IPR002110 GO:0005515
Rops9g01885 869 SUPERFAMILY Voltage-gated potassium channels 65 307 - -
Rops9g01885 869 MobiDBLite consensus disorder prediction 9 32 - -
Rops9g01885 869 ProSiteProfiles Ankyrin repeat region circular profile. 656 687 - -
Rops9g01885 869 SUPERFAMILY cAMP-binding domain-like 311 507 IPR018490 -
Rops9g01885 869 SMART cnmp_10 386 503 IPR000595 -
Rops9g01885 869 ProSiteProfiles cAMP/cGMP binding motif profile. 386 505 IPR000595 -
Rops9g01885 869 ProSiteProfiles KHA domain profile. 806 869 IPR021789 -
Rops9g01885 869 Pfam Cyclic nucleotide-binding domain 406 491 IPR000595 -
Rops9g01885 869 ProSiteProfiles Ankyrin repeat profile. 597 625 IPR002110 GO:0005515
Rops9g01885 869 Gene3D Jelly Rolls 354 512 IPR014710 -
Rops9g01885 869 ProSiteProfiles Ankyrin repeat region circular profile. 564 595 - -
Rops9g01885 869 Pfam KHA, dimerisation domain of potassium ion channel 806 868 IPR021789 -
Rops9g01885 869 SUPERFAMILY Ankyrin repeat 535 714 IPR036770 -
Rops9g01885 869 Gene3D - 73 307 - -
Rops9g01885 869 SMART ANK_2a 656 685 IPR002110 GO:0005515
Rops9g01885 869 SMART ANK_2a 597 626 IPR002110 GO:0005515
Rops9g01885 869 SMART ANK_2a 531 560 IPR002110 GO:0005515
Rops9g01885 869 SMART ANK_2a 564 593 IPR002110 GO:0005515
Rops9g01885 869 MobiDBLite consensus disorder prediction 1 32 - -
Rops9g01885 869 Pfam Ion transport protein 71 313 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Rops9g01885 869 Gene3D - 533 711 IPR036770 -
Rops9g01885 869 ProSiteProfiles Ankyrin repeat region circular profile. 597 625 - -
Rops9g01885 869 PRINTS Ankyrin repeat signature 565 580 IPR002110 GO:0005515
Rops9g01885 869 PRINTS Ankyrin repeat signature 672 686 IPR002110 GO:0005515
Rops9g01885 869 FunFam Potassium channel KAT2 374 510 - -
Rops9g01885 869 ProSiteProfiles Ankyrin repeat profile. 656 688 IPR002110 GO:0005515
Rops9g01885 869 CDD CAP_ED 386 475 IPR000595 -
Rops9g01885 869 FunFam Potassium channel KAT3 72 308 - -
Rops9g01885 869 Coils Coil 14 34 - -
Rops9g01885 869 PRINTS EAG/ELK/ERG potassium channel family signature 298 307 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops9g01885 869 PRINTS EAG/ELK/ERG potassium channel family signature 254 271 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops9g01885 869 PRINTS EAG/ELK/ERG potassium channel family signature 280 291 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops9g01885 869 PRINTS EAG/ELK/ERG potassium channel family signature 106 116 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops9g01885 869 PRINTS EAG/ELK/ERG potassium channel family signature 117 126 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops9g01885 869 PRINTS EAG/ELK/ERG potassium channel family signature 83 90 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops9g01885 869 Pfam Ankyrin repeats (3 copies) 631 699 IPR002110 GO:0005515
Rops9g01885 869 Pfam Ankyrin repeats (3 copies) 536 625 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01885 Rops-Chr9 34368229 34374954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01885 33 869 Ion Channels AT2G25600 58.216 0.0 980
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01885 K21867 - gmx:100808832 1251.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01885 9 34368229 34374954 Rops9g01885 9 34368229 34374954 ECH
Rops9g01885 9 34368229 34374954 Rops10g01429 10 27403307 27409747 PCT