Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01866 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGATGTTTATATCCATGATTACCTTGTGAAGAGGGATTTGAAGGCTTCAGCTCAGGCTTTTCAAGCTGAAGGGAAAGTTTCCTCGGACCCTGTTGCTATTGATGCCCCAGGAGGATTTCTGTTTGAGTGGTGGTCAGTTTTCTGGGACATATTTATTGCCAGGACTAATGAGAAGCACTCAGAGGTTGCTGCATCTTATATCGAGACACAGTTAATTAAAGCTAGGGAGCAGCAGCAGCAGCAACAACAGCAGCAGCCACAACCTCAGCAGTCACCACATCAACAGCAGCAGCAGCAGCAGCAACAGCAACAACAACAGCACATGCAGATGCAACAGATGCTGTTGCAGAGGCATGCTCAGCAGCAGCAACAACAACAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAACAACCCCAACATCAGCAGCCACCACCACAACAACAGCAGAGTAGGGATAGAGCTCATCTCTTAAATGGTGGTACAAATGGGTTAGTTGGGAATCCTAGCACTGCAAATGCAATGGCAACAAAGATGTATGAGGAAAGGTTAAAACTGCCCCTTCAGAGGGATTCTATGGAAGATGCGGCAATGAAGCAAAGGTTTGGAGATCAACTCTTGGATCCAAATCATGCCTCAATATTGAAGTCATCTGCAGCTACTGGCCAGCCTTCAGGGCAAGTTTTGCATGGTGCTGCTGGTGCGATGTCTCCACAAGTTCAAGCTCGTAGTCAGCAATTACCAGGATCTACTCCGGATATAAAGAGTGAGATTAATCCTGTTTTAAATCCCAGAGCTGCGGGTCCTGAAGGATCGTTGATAGCAATGCCTGGATCAAATCAAGCTAGCAACAATTTGACTCTGAAAGGATGGCCACTCACAGGGTTCGAGCAACTACGCTCTGGGCTACTCCAGCAACAAAAACCTTTCATACAGGCTCCTCAGCCTTATCATCAACTTCCAATGTTGACTCCACAGCATCAGCAACAACTTATGCTAGCACAGCAAAATTTGGCATCACCATCTGCTAGTGACGATAGTAGAAGACTCAGAATGCTACTGAATAATAGGAATATGGGTGTAAGTAAAGATGGCCTTTCAAATCCTGTTGGTGATGTAGTATCAAATGTTGGATCACCTCTTCAAGCAGGTGGTCCTCCTTTTCCTCGTGGCGATACAGATATGATAATGAAGTTGAAACTGGCTCAGTTACACCAACATCAACAACAGCAGAATGCCAATCCACAGCAGCAGCAACTTCAACAGCATGCTCTTTCAAATCAGCAATCTCAAACTTCAAATCATAGCATGCATCAACAAGATAAAGTAGGGGGAGGTGGTGGCAGTGTCACTGTGGATGGAGGCATGTCAAACTCCTTTAGAGGAAATGATCAGGTTTCCAAAAACCAGACAGGGAGAAAGAGAAAGCAGCCTGTATCTTCTTCTGGTCCCGCGAATAGTTCAGGAACAGCAAATACAGCAGGCCCGTCTCCAAGTTCTGCACCCTCAACTCCCTCAACTCATACGCCTGGTGATGTAATATCAATGCCTGCTTTACCTCTCAGTGGTAGTTCTTCAAAGCCATTGATGATGTTTGGCACAGATGGTACTGGAACTCTTACCTCACCTTCAAACCAATTGTGGGATGATAAGGATCTTGAATTGCAGGCTGATGTGGATCGTTTTGTGGAGGATGGATCTCTTGATGACAATGTTGAGTCTTTTTTATCCCATGATGATACAGATCCTAGAGATACTATTGGTCGTTCTATGGATGTAAGCAAAGGCCTCACATTTTCTGAAGTAAACTCGGTACGTGCAAGCTCCAGCAAAGTTGTTTGTTGCCATTTTTCATCTGATGGGAAATTGCTTGCAAGTGGTGGCCATGACAAAAAGGCTGTTTTATGGTTCACAGATTCTCTAAAGCAGAAAGCTACTCTTGAAGAGCATTCATCTTTAATCACTGATGTTCGTTTCAGTCCAAGCATGCCTCGTCTTGCAACATCTTCATATGACAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGAGTATTCACTCCGGACCTTTACGGGACATTCTGCATCTGTTATGTCACTGGATTTTCACCCTAATAAAGATGACCTTATCTGCTCTTGTGATTTTGACGGTGAGATAAGATATTGGAGCATTAACAATGGCAGTTGTGCTAGAGTCTCAAAGGGTGGCACTGCCCAGATGAGATTTCAACCTCGTCTTGGGAGGTATCTCGCTGCAGCTGCAGAGAATGTTGTCTCTATACTTGATGTAGAAACACAAGCATGCCGATATTCATTAAAGGGCCATACAAAGTCAATACATTCTGTGTGTTGGGACCCTTCTGGGGAGTTCCTTGCATCTGTCAGTGAGGATTCTGTCAGGGTTTGGACTCTTGGAACAGGGAGTGAAGGGGAATGTGTTCATGAGCTTAGCTGCAATGGCAATAAGTTTCACTCGTGTATTTTCCATCCAACGTATTCTTCATTGCTGGTCATTGGTTGTTACCAGTCATTGGAGCTCTGGAACATGACTGAGAACAAGACAATGACCCTGTCTGCTCATGAAGGTCTGATTGCTGCATTGTCAGTCTCAACTGTAAATGGTTTGGTTGCTTCAGCCAGTCATGACAAGTTTGTCAAACTTTGGAAGTGA 2727 0.4499 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQPQPQQSPHQQQQQQQQQQQQQHMQMQQMLLQRHAQQQQQQQQQQQQQQQQQQQQQQQQQQPQHQQPPPQQQQSRDRAHLLNGGTNGLVGNPSTANAMATKMYEERLKLPLQRDSMEDAAMKQRFGDQLLDPNHASILKSSAATGQPSGQVLHGAAGAMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPEGSLIAMPGSNQASNNLTLKGWPLTGFEQLRSGLLQQQKPFIQAPQPYHQLPMLTPQHQQQLMLAQQNLASPSASDDSRRLRMLLNNRNMGVSKDGLSNPVGDVVSNVGSPLQAGGPPFPRGDTDMIMKLKLAQLHQHQQQQNANPQQQQLQQHALSNQQSQTSNHSMHQQDKVGGGGGSVTVDGGMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVISMPALPLSGSSSKPLMMFGTDGTGTLTSPSNQLWDDKDLELQADVDRFVEDGSLDDNVESFLSHDDTDPRDTIGRSMDVSKGLTFSEVNSVRASSSKVVCCHFSSDGKLLASGGHDKKAVLWFTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSYDKTVRVWDVDNPEYSLRTFTGHSASVMSLDFHPNKDDLICSCDFDGEIRYWSINNGSCARVSKGGTAQMRFQPRLGRYLAAAAENVVSILDVETQACRYSLKGHTKSIHSVCWDPSGEFLASVSEDSVRVWTLGTGSEGECVHELSCNGNKFHSCIFHPTYSSLLVIGCYQSLELWNMTENKTMTLSAHEGLIAALSVSTVNGLVASASHDKFVKLWK* 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01866 908 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 666 701 - -
Rops9g01866 908 ProSiteProfiles Trp-Asp (WD) repeats profile. 709 751 IPR001680 GO:0005515
Rops9g01866 908 ProSiteProfiles Trp-Asp (WD) repeats profile. 876 908 IPR001680 GO:0005515
Rops9g01866 908 MobiDBLite consensus disorder prediction 423 459 - -
Rops9g01866 908 ProSitePatterns Trp-Asp (WD) repeats signature. 685 699 IPR019775 -
Rops9g01866 908 Pfam WD domain, G-beta repeat 663 698 IPR001680 GO:0005515
Rops9g01866 908 Pfam WD domain, G-beta repeat 787 821 IPR001680 GO:0005515
Rops9g01866 908 Pfam WD domain, G-beta repeat 623 655 IPR001680 GO:0005515
Rops9g01866 908 Pfam WD domain, G-beta repeat 706 742 IPR001680 GO:0005515
Rops9g01866 908 Pfam WD domain, G-beta repeat 871 908 IPR001680 GO:0005515
Rops9g01866 908 ProSiteProfiles Trp-Asp (WD) repeats profile. 666 707 IPR001680 GO:0005515
Rops9g01866 908 Coils Coil 127 157 - -
Rops9g01866 908 MobiDBLite consensus disorder prediction 423 549 - -
Rops9g01866 908 CDD WD40 620 908 - -
Rops9g01866 908 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 876 908 - -
Rops9g01866 908 Pfam LisH 10 36 IPR006594 GO:0005515
Rops9g01866 908 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 908 - -
Rops9g01866 908 SMART Lish 8 40 IPR006594 GO:0005515
Rops9g01866 908 MobiDBLite consensus disorder prediction 89 115 - -
Rops9g01866 908 ProSiteProfiles Trp-Asp (WD) repeats profile. 791 831 IPR001680 GO:0005515
Rops9g01866 908 SUPERFAMILY WD40 repeat-like 619 908 IPR036322 GO:0005515
Rops9g01866 908 MobiDBLite consensus disorder prediction 151 190 - -
Rops9g01866 908 SMART WD40_4 784 822 IPR001680 GO:0005515
Rops9g01866 908 SMART WD40_4 617 656 IPR001680 GO:0005515
Rops9g01866 908 SMART WD40_4 659 698 IPR001680 GO:0005515
Rops9g01866 908 SMART WD40_4 828 867 IPR001680 GO:0005515
Rops9g01866 908 SMART WD40_4 869 908 IPR001680 GO:0005515
Rops9g01866 908 SMART WD40_4 702 742 IPR001680 GO:0005515
Rops9g01866 908 Gene3D - 603 754 IPR015943 GO:0005515
Rops9g01866 908 Gene3D - 755 908 IPR015943 GO:0005515
Rops9g01866 908 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 709 747 - -
Rops9g01866 908 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Rops9g01866 908 FunFam Transcriptional corepressor LEUNIG 752 908 - -
Rops9g01866 908 ProSiteProfiles Trp-Asp (WD) repeats profile. 624 655 IPR001680 GO:0005515
Rops9g01866 908 MobiDBLite consensus disorder prediction 471 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01866 Rops-Chr9 33713278 33729623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01866 704 907 Miscellaneous Gene Families AT5G08390 26.316 4.18e-14 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Rops9g01866 WD40 0.11 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01866 - - gmx:100779972 1316.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01866 9 33713278 33729623 Rops10g01439 10 27540724 27549798 PCT