Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01861 ATGAATAAAGAAAATGCTGTCATGGTTGGAGCTGTTCGGGTTACTCGAGCAAGGGCTCGAGCATTGGAAGGTGGTGTATCTGCTTCCTCGAGAACCTCTTTTAAAAAGGAACAGCATAAAAACGACGTAGTTCTTGGACTTAGCTCCAAAAGAGCAGCTTCCAACAACAACAATAAAACTTCTTTTGTTATGCCTGTGCTAACAGATGTAACTAACATATCTGAAAAATCATCCTATAAGAAGTGTATCAAGACAAGAGGAGGTTATAAAAAGAGAAACACAAAGGCAGCTTCAGATGTCTTCGACGTTTTGTCAACCCAAGAAGAGGATGTTAGAGCAAAGTTAGCTAAAGATTCATCCACAATAACGAGGGTAGAGTCACATGACACCATGGCCGAAGGAAGGGTAGAAGAAGACAGAGAGCCAATGCAACTTTGTAAGTTCAATAGCATGAGAGAACGTGTAATGGCAGATCCCCTGTTATCAATGCAGGGCACTTTGACGTCTGATGAACTAATGAGCGCTCCAAATAAAGACATAGATATGATTCGTAGGATTCCTAGAGCCCCTGGTGGCCCGGGCATTGTGAATATTGATTCATTGCGAAGGGATTCTCCCGTTTGGAGTTCATATGCCCCTGATATATACAATAATATTCGTTTCAGAGAGTGTGAAAAGAGACCGTTAGCTGATTACATGGACAAACTGCAGCAATATATCAATCCAAAAATGCGGGCAATTCTGGTTAATTGGCTTGTGGAGGTTTCCGGGGAATATGCACTAGCTCCAGACACTCTTTACCTTACAGTGAATCTCATTGATCGATTTCTTTCTACAAGTTCAATTCAGATACGAAGGCTCCAGTTGCTTGGTGTTACTTGCATGCTGATTGCATCAAAGTATGAAGAGATTTGTGCTCCTCGAGTGGAAGATTTTTGCTACATCACAGATAATGCATACACGAAAGCAGAGGTATTGAAAATGGAGCAGGAGGTTCTAAATAGTTTGCGTTTTCAAATATCTGTTCCCACAACCAAAACATTTCTCAGGAGGTTCATCCATGCTGCACAATCTTCTTATTCTCACCCGGTTGCTTATCTTGAACTGGAATTCCTGGCAAATTATTTAGCAGAGCTTACTCTTGTTGAATACAGCTTCTTGCAGTTTCTACCTTCCCTGATAGCTGCATCTGCTGTATTACTTGCCAGATGGACCCTCACCCAGTTAGATCATCCATGGAATCCAACTCTGGAACACTATACAAATTACAAAACGTCAGAGCTTAAAACTACTGTCCTTGCACTGGTAGATTTGCAACTTAATGTCGAAGGCTCTTGTCTAAATGCTATACGTAACAAATATAAACGAGACGAGTTCAGGGGTGTCGCAGATTTGATGCCAAAACCGGTGGAGTCACTTTTCCGGGTTCAAGTGTAA 1437 0.4161 MNKENAVMVGAVRVTRARARALEGGVSASSRTSFKKEQHKNDVVLGLSSKRAASNNNNKTSFVMPVLTDVTNISEKSSYKKCIKTRGGYKKRNTKAASDVFDVLSTQEEDVRAKLAKDSSTITRVESHDTMAEGRVEEDREPMQLCKFNSMRERVMADPLLSMQGTLTSDELMSAPNKDIDMIRRIPRAPGGPGIVNIDSLRRDSPVWSSYAPDIYNNIRFRECEKRPLADYMDKLQQYINPKMRAILVNWLVEVSGEYALAPDTLYLTVNLIDRFLSTSSIQIRRLQLLGVTCMLIASKYEEICAPRVEDFCYITDNAYTKAEVLKMEQEVLNSLRFQISVPTTKTFLRRFIHAAQSSYSHPVAYLELEFLANYLAELTLVEYSFLQFLPSLIAASAVLLARWTLTQLDHPWNPTLEHYTNYKTSELKTTVLALVDLQLNVEGSCLNAIRNKYKRDEFRGVADLMPKPVESLFRVQV* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01861 478 Pfam Cyclin, N-terminal domain 214 340 IPR006671 -
Rops9g01861 478 FunFam Mitotic cyclin 6 228 328 - -
Rops9g01861 478 CDD CYCLIN_AtCycA-like_rpt2 343 459 - -
Rops9g01861 478 PIRSF Cyclin_A_B_D_E 15 475 IPR046965 GO:0016538|GO:0044772
Rops9g01861 478 Gene3D - 228 341 - -
Rops9g01861 478 Pfam Cyclin, C-terminal domain 343 466 IPR004367 -
Rops9g01861 478 SMART cyclin_7 250 334 IPR013763 -
Rops9g01861 478 SMART cyclin_7 347 437 IPR013763 -
Rops9g01861 478 SMART Cyclin_C_2 343 468 IPR004367 -
Rops9g01861 478 ProSitePatterns Cyclins signature. 245 276 IPR006671 -
Rops9g01861 478 PANTHER CYCLINS 158 454 IPR039361 -
Rops9g01861 478 Gene3D - 214 464 - -
Rops9g01861 478 SUPERFAMILY Cyclin-like 207 340 IPR036915 -
Rops9g01861 478 FunFam Cyclin A1 330 464 - -
Rops9g01861 478 SUPERFAMILY Cyclin-like 342 467 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01861 Rops-Chr9 33579356 33585841 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01861 12 474 Core Cell Cycle Gene Families AT5G25380 48.750 4.81e-128 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01861 K06627 - gmx:100777132 548.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01861 9 33579356 33585841 Rops10g01449 10 27735174 27740080 PCT