Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01858 ATGAATAAAGAAAATGCTGTTCGGGTTACTCAAGCATTGGAAGGTGTATCTGCTTCCTCGAGAACCTCTTTTAAAAAGGAACAACATAAAAACGACGTAGTTCTTGGACTTAGCTCCAAAAGAGCAGCTTCCAACAACAACAAAACTTCCTTTGTTATGCCTGTGCTAACAGATGTAACTAATGTATGTGAAATATCACAAGATAAAAAGCGTATCAAGGGATCAAAATTTCAGACAAGAGGAGGTTATAAAAAGAGAAACACAAAGGCAGCTTCAGATGTCTCCAAACAAGTTTTGTCAACCCAAGAAGAGGATGTTAGAGCAAAGTTAGCTAAAGATTCATCCACAATAACGAGGGTAGAGTCACATGACACCATGGCCGAAGGAAGGGTAGAAGAAGACAGAGAGCCAATGCAACTTTGTAAGTTCAATAGCATGAGAGAACGTGTAATGGCAGATCCCCTGTTATCAATGCAGGGCACTTTGACGTCTGATGAACTAATGAGCGCTCCAAATAAAGAAACCAATTGCCCCTCCTCCCTCTTTCAAACCCATTCCTTCCTTTCTTTCTTTTCACTCTCTGACTCTGACTCTGACTCTGACTCTCCCCCTTCTGCCCCTTTTCTTTCTACTTGTACTATTCCCTGCAACCTCATTCTCCCTCTCTTGAAAGACATAGATATGATTCGTGGGAATCCAAGAGCCTCTGATGGCCCGGGCATATACAATACTCTTCGTGTCATAGAGTGTGACAAGAGACCGTTAGCCGATTACATGGACAAGTTGCAGCAAGATATCAATCCAAACATGCGTGCAATTCTGGTTGATTGGCTTGTGGAGGTTAGTCCCATTGCTGTTTCCGAGAAATATACACTATTTCCAGACACTCTGTACCTTACAGTGAATCTCATTGATCGATTTCTTTCTACAAGTTCAATTCAGAGACAAAGGCTTCAGTTGCTTGGTGTTACTTGCATGCTGATTGCATCAAAGTATGAAGAGATTTGTCCTCCTCACGTGGAAATGTTTTGCTTCATCACAGATAATGCATACATGAAAGAAGAGGTATTGAAAATGGAGCAGGAGGTTCTAAATAGTTTGCGTTTTCAAATATCTGTTCCCACAACCAAAACATTTCTCAGGAGGTTCATCCATGCTGCACAATCTTCTTATTCTCACCCGGTTGCTTATCTTGAACTGGGATTCCTGGCAAATTATTTAGCAGAGCTTACTCTTGTTGAATACAGCTTCTTGCAGTTTCTACCTTCCCTGATAGCTGCATCTGCTGTATTACTTGCCAGATGGACCCTCACCCAGTTAGATCATCCATGGAATCCAACTCTGGAACACTATACAAATTACAAAACGTCAGAGCTTAAAACTACTGTCCTTGCACTGGTAGATTTGCAACTTAATGTCGAAGGCTCTTGTCTAAATGCTATACGTAACAAATATAAACGAGACGAGTTCAGGGGTGTGGCAGATTTGATGCCAAAACCGGTGGAGTCACTTTTCCGGGTTCAAGTGTAA 1530 0.4157 MNKENAVRVTQALEGVSASSRTSFKKEQHKNDVVLGLSSKRAASNNNKTSFVMPVLTDVTNVCEISQDKKRIKGSKFQTRGGYKKRNTKAASDVSKQVLSTQEEDVRAKLAKDSSTITRVESHDTMAEGRVEEDREPMQLCKFNSMRERVMADPLLSMQGTLTSDELMSAPNKETNCPSSLFQTHSFLSFFSLSDSDSDSDSPPSAPFLSTCTIPCNLILPLLKDIDMIRGNPRASDGPGIYNTLRVIECDKRPLADYMDKLQQDINPNMRAILVDWLVEVSPIAVSEKYTLFPDTLYLTVNLIDRFLSTSSIQRQRLQLLGVTCMLIASKYEEICPPHVEMFCFITDNAYMKEEVLKMEQEVLNSLRFQISVPTTKTFLRRFIHAAQSSYSHPVAYLELGFLANYLAELTLVEYSFLQFLPSLIAASAVLLARWTLTQLDHPWNPTLEHYTNYKTSELKTTVLALVDLQLNVEGSCLNAIRNKYKRDEFRGVADLMPKPVESLFRVQV* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01858 509 Gene3D - 241 495 - -
Rops9g01858 509 Gene3D - 254 372 - -
Rops9g01858 509 Pfam Cyclin, N-terminal domain 241 371 IPR006671 -
Rops9g01858 509 PIRSF Cyclin_A_B_D_E 1 167 IPR046965 GO:0016538|GO:0044772
Rops9g01858 509 PIRSF Cyclin_A_B_D_E 238 506 IPR046965 GO:0016538|GO:0044772
Rops9g01858 509 SUPERFAMILY Cyclin-like 373 498 IPR036915 -
Rops9g01858 509 FunFam Cyclin A1 361 495 - -
Rops9g01858 509 SMART cyclin_7 276 365 IPR013763 -
Rops9g01858 509 SMART cyclin_7 378 468 IPR013763 -
Rops9g01858 509 SUPERFAMILY Cyclin-like 240 371 IPR036915 -
Rops9g01858 509 Pfam Cyclin, C-terminal domain 374 497 IPR004367 -
Rops9g01858 509 FunFam Mitotic cyclin 6 254 359 - -
Rops9g01858 509 CDD CYCLIN_AtCycA-like_rpt2 374 490 - -
Rops9g01858 509 SMART Cyclin_C_2 374 499 IPR004367 -
Rops9g01858 509 PANTHER CYCLINS 239 485 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01858 Rops-Chr9 33545236 33553209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01858 238 505 Core Cell Cycle Gene Families AT5G25380 62.082 8.79e-113 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01858 K06627 - gmx:100805701 483.411