Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01855 ATGTGCTCCCAATGCAACCTCCCAGTGGTGGACGACGACAGGGAAGGATTTGTATTTAAAGGTCCAAACGGCACTTTCCTGTTGTTGATGGAGCAGCCTGGGACCTTCAACAGCAGTCAGCATATCATAGAAATAACCGGGAGTCCTGATGCTTCCACATCTGCCTCACCTCGTGACAGACATTTTAATGGTGTAGATGTGACACAGCATGAGGAAAGAACAAGTAGTGTGCGGTTGGCTGTTACTCAGCCTTCAGTTTCAACCTCTGGCATATCTAATGGATCAAATAGTAGGAATTCTTCATTCATGAGACGTGGGGAGTCTCGTCGGAATAGAAGTCCTGTGCACTCTGGGTTATGGATATCTATTGAGCTAGTCCTCTTAGTAAGCCAGATTGTTGCATCTATTGTTGTTTTGTCTTTGTCAAGGCATGAGCATCCTCGTACCCCATTGTTTCAATGGATTGTGGGTTATGCTTCTGGGTGTGTTGCTACCCTCCCTCTTCTTTATTGGCGGTATTATCATCATAACCATATACGAGAGCAAGATTTGTCTCAGTCACGTCAAACATCTCCTCGGATTAATGATACTTCAGGGACACTTCTTTCCAGTTCCAGAACTAATGGAGGAGAAGATGGTCAGGCTGCTGCTGCATCCTCTAGAAGCAATCAATCTTCCATATTGATGAATCGAAGAATGAAGACACTCGTGGAATACTTCAAAATATCATTAGATTGCTTTTTTGCTGTATGGTTTGTTGTTGGAAATGTATGGATCTTTGGGGGACATTCATCTGTGGATGAAGCTCCTAACTTGTACAGGTTATGTATAGTGTTTCTTGCATTTAGCTGTATTGGTTATGCTATGCCCTTTATTCTCTGTTCAACAATCTGCTGTTGTCTCCCTTGTATAATTTCCATCCTTGGGGTTAGAGAGGATCTGTCACAAAACAGAGGGGCAACTTCTGAATCCATTAATGCTCTGCCAACTTTCAAGTTCAAAATGAAGAAAAATAAAAGAAACGGTGAAAGCAACTCAGCTGCTGTGGAAGGTGGAATTGTGGCTGCAGGAACTGAAAAAGAGCGGGTGATCTCTGGAGAAGATGCGGTTTGTTGCATCTGCCTGGCAAAGTATGAAAATAACGATGAGCTGAGAGAATTGCCTTGTTCTCATCTCTTCCACAAAGATTGTGTTGATAAATGGTTGAAGATAAATGCATTATGCCCTCTTTGCAAGAGTTTGGTCGGTCAAAACATAACAGAATCGGCCTCCGGAGAAGATGCCAGCCAACAACGGGGAGAAAGCAGGGTTGAGAATGCCTCAGTTTAA 1329 0.4327 MCSQCNLPVVDDDREGFVFKGPNGTFLLLMEQPGTFNSSQHIIEITGSPDASTSASPRDRHFNGVDVTQHEERTSSVRLAVTQPSVSTSGISNGSNSRNSSFMRRGESRRNRSPVHSGLWISIELVLLVSQIVASIVVLSLSRHEHPRTPLFQWIVGYASGCVATLPLLYWRYYHHNHIREQDLSQSRQTSPRINDTSGTLLSSSRTNGGEDGQAAAASSRSNQSSILMNRRMKTLVEYFKISLDCFFAVWFVVGNVWIFGGHSSVDEAPNLYRLCIVFLAFSCIGYAMPFILCSTICCCLPCIISILGVREDLSQNRGATSESINALPTFKFKMKKNKRNGESNSAAVEGGIVAAGTEKERVISGEDAVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKINALCPLCKSLVGQNITESASGEDASQQRGESRVENASV* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01855 442 SUPERFAMILY RING/U-box 363 418 - -
Rops9g01855 442 Pfam Ring finger domain 371 412 IPR001841 -
Rops9g01855 442 MobiDBLite consensus disorder prediction 184 219 - -
Rops9g01855 442 FunFam E3 ubiquitin-protein ligase 354 421 - -
Rops9g01855 442 ProSiteProfiles Zinc finger RING-type profile. 371 412 IPR001841 -
Rops9g01855 442 MobiDBLite consensus disorder prediction 83 102 - -
Rops9g01855 442 MobiDBLite consensus disorder prediction 83 113 - -
Rops9g01855 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 354 417 IPR013083 -
Rops9g01855 442 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 30 413 - -
Rops9g01855 442 SMART ring_2 371 411 IPR001841 -
Rops9g01855 442 MobiDBLite consensus disorder prediction 422 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01855 Rops-Chr9 33513603 33526240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01855 104 423 C3H Transcription Factor Family AT1G80400 57.846 9.60e-139 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01855 - - gmx:100778728 709.523