Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01845 ATGGGAGAGGTGGCAGTGATGCACTCTGAGCCTCTGCAATTTGAATGCAATGACATAAAACATATGACTCAGAAAGACGTTTATCCTCCAGAATCAAATGTGGAGGGCTTGCATGGAGAAGAATCAGGTCAATCAACAGATCACAAAGAGACCAATGACTTGCGAGAGAAAGGATATATGGAACATGGATGCCAACATTATCGGAGGAGATGCCGTATCAGGGCCCCCTGTTGCAATGAGATTTTTGATTGCCGCCAATGTCACAATGAGGTGAAAAATGATATCAACATTGATCAGAAGCATAGACATGACATTCCTCGACACCAAGTCAAACAGGTGATATGTTCACTTTGTGGCACCGAACAAGAGGTTCAGCAAAACTGTATCAATTGTGGTGTTTGCATGGGCAAGTACTTCTGTGGGATATGCAAGCTCTTTGATGATGATATATCTAAGCAGCAGTACCATTGCAGTGGCTGTGGAATTTGCAGAACTGGAGGACGTGAGAATTTCTTCCATTGCTACAAGTGTGGTTGTTGCTATTCAACTCTGCTAAAAAACAGCCACCCCTGTGTGGAAGGAGCAATGCATCATGATTGCCCCGTTTGTTTTGAGTATTTGTTTGAATCAAGAAATGATGTAACCGTTATGCCATGTGGACATACAATCCATAAGAGCTGTCTGAATGAAATGAGAGAACATTTCCAGTATGCATGCCCTCTCTGCTCGAAGTCGGTCTGTGACATGTCAAAGGTTTGGGAGAAATTTGATTTGGAGATTGCTGCTACACCAATGCCTGAGCCATATCAAAATAAAATGGTTTGGATCTTGTGCAATGATTGCGGGAAAACTTCTCACGTTCGGTTCCATTTTGTGGCTCAAAAATGCCTGAACTGCAAATCCTACAACACACGACAGACAAGAGGCTGA 930 0.4301 MGEVAVMHSEPLQFECNDIKHMTQKDVYPPESNVEGLHGEESGQSTDHKETNDLREKGYMEHGCQHYRRRCRIRAPCCNEIFDCRQCHNEVKNDINIDQKHRHDIPRHQVKQVICSLCGTEQEVQQNCINCGVCMGKYFCGICKLFDDDISKQQYHCSGCGICRTGGRENFFHCYKCGCCYSTLLKNSHPCVEGAMHHDCPVCFEYLFESRNDVTVMPCGHTIHKSCLNEMREHFQYACPLCSKSVCDMSKVWEKFDLEIAATPMPEPYQNKMVWILCNDCGKTSHVRFHFVAQKCLNCKSYNTRQTRG* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01845 309 MobiDBLite consensus disorder prediction 28 51 - -
Rops9g01845 309 Pfam Zinc-ribbon 247 305 IPR039512 -
Rops9g01845 309 SUPERFAMILY RING/U-box 199 248 - -
Rops9g01845 309 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 44 308 - -
Rops9g01845 309 CDD RING-H2_Pirh2-like 199 243 - -
Rops9g01845 309 Pfam Ring finger domain 199 242 IPR001841 -
Rops9g01845 309 ProSiteProfiles Zinc finger RING-type profile. 200 243 IPR001841 -
Rops9g01845 309 ProSiteProfiles Zinc finger CTCHY-type profile. 135 199 IPR017921 -
Rops9g01845 309 ProSiteProfiles Zinc finger CHY-type profile. 57 133 IPR008913 GO:0008270
Rops9g01845 309 SUPERFAMILY Zinc hairpin stack 136 193 IPR037275 -
Rops9g01845 309 SMART ring_2 200 242 IPR001841 -
Rops9g01845 309 Pfam CHY zinc finger 64 145 IPR008913 GO:0008270
Rops9g01845 309 Gene3D - 271 309 - -
Rops9g01845 309 SUPERFAMILY CHY zinc finger-like 61 135 IPR037274 GO:0008270
Rops9g01845 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 245 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01845 Rops-Chr9 33272134 33277515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01845 62 309 C2H2 Transcription Factor Family AT3G18290 39.764 4.21e-54 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01845 K10144 - gmx:100803569 640.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01845 9 33272134 33277515 Rops10g01463 10 27905788 27912121 PCT