Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01843 ATGGACGACGAAGCGAATCAAAATCAAGACCAAGTTCCGCCGCTGGAATCTCATTCTCACGACGGCGACGGTGAAGAAGATGAAGAGGAAGAGGAAGAGGAGGAGGAGGAGGAGGAGTCGAAGAAGGAAGAAGAGGAGATGATTGCAAAGGCTAACAAGTTAATGGAGAAGATCACTTGTGCTCCTGATAACCCTAAACCCACCGTCCTTCATGCCCTTGCCTCCATTCTTGAAATCCAAGAGTCACGATACATGGAAGAGAATGACTATTCTTCATCCAGTAATGCCCGTGCTTCACATAACATTGGGCGACTTGGGAGCTTAATAAGGGAAAATGACGAGTTCTTTGAGTTGATATCTTCGAAGTTTTTGTCAGAAACAAGATACAATACTTCCATTCGGGCTGCTGCTGCCAGGCTTCTCCTGTGTTGTTCGCTAACTTGGATTTATCCCCATGTTTTTGAAGAATCTGTCCTGGAGAACATCAAACATTGGGTGATGGATGCGAATGCTAATCTGTCTGCCGAGGAACAAAATCTGAAGCGTAATCCAGCTAGAAAGGAAGCCTCAGATTCTGAAATGTTGAAAACCTATTCTACTGGTCTTCTTGCCGTGTGTTTAGCTGGTGGAGGTCAAGTGGTTGAAGATGTCTTGACATCTGGCTTGTCAGCCAAGCTTATGCGATATCTTCGTTTGCGTGTGCTGGGGGAGACAAGTAGCAGCCAGAAAGACACTAATCCTTTAACAGACAGTAGGCATGCATCTGGGAATACTTCAATGAGAGGTAGAGATGATGGTCGCAATAGATTTCGCCAGGTCCTAGAATCAAGTCATTTTGATGATACAAGGGTGATTGATGAGAGATCGTCAGATGATCGAATTCTTGAAAGGGATCCAGATAAAAGCATCAGCGGACAAACTTGCCAAGAAGATTCTCGGATAGATGGTGAACCCCCTGATGGACTGAGTGAAGGAGCTGGCATCTGTGATGTAGACACTGATGGAGAGGATAGATGGCATTGTAGAGATACACGTGATGGAAGGATAAAATTTGGTGACCAGGAAGACAATGCTAGAGATGACTCTTCAAGACGGCGTGTGAACCGTGGATGGGGAAGATCCAGAGGGAAGGGAAGGGTCAATGAAGGGAATGTAGAAAGTGAACCAGTCTTGTCATCCCCTGGTTCTGGTAGTCGATCAGTACAAGGAAAGGGTGTTAGAGATAGGAGCATGTTAAAAAATGTTGATATCAGAATGGTACCTGATTCTAAGAAGAATGTTTCCAGGATCTCCTCTGAGGCAAATGTTTTGGATAGAGATGATAATGATGATTGTTTCCAAGAGTGCTATGTTGGAAGTAAAGATTTCTCTGATCTTGTTAGGAAAGCAGTCCAAGGTGCCAAAGCTGAAGCTAGATCTGCCAATGCACCTGAAGAAGCTGTCAAGGCAGCTGGTGATGCTGCTGCTGAACTTGTTAAAACTGCAGCTTCAGAGGAATTCAAATCCACTAATGATGAAGAAGCTGCTGTTTTAGCTGCTTCAAAAGCTGCATCAACTGTAATTGATGCTGCATCTGCAGTTGAAGTCTCAATGAGCTCCATCAGCATCAATAAGGAGTCAGAAAATGAAGGTGTCCAAGACACACAATCTGGCGAGGAAGTTGAAGATTACTTCATCCCAGATACTCAATCACTTTTGCAGTTGAGGGAAAAATATTGCATTCAGTGTCTTGAGCTTCTTGGAGAATATGTAGAAGTTCTTGGCCCTGTATTACATGAGAAGGGGGTTGATGTGTGCCTTGCACTTCTGCAACAGAATTCTAAACATCAAGAGGTTTCCAAAGTTGCTCTACTGTTACCTGATGTCATGAAGCTGATCTGTGCTTTGGCTGCTCATAGGAAGTTTGCTGCACTATTTGTGGACCGTGGGGGCATGCAGAAGCTTCTCGCTGTCCCTAGAATGGCTCAAACTTTCTTTGGCCTTTCTTCTTGTCTATTTACTATTGGTTCTCTGCAGGGGATAATGGAAAGGGTTTGTGCTCTTTCATCAGATGTTATTTATCATTTGGTTGAGTTGGCTCTCCAGCTCCTTGAATGCAACCAAGACCAAGCTCGGAAGAATGCTGCATTGTTTTTTGCTGCTGCATTTGTCTTTAGAGCAGTTCTTGATGCTTTTGATGCCCAGGATGGATTACAGAAATTACTGGGCCTTCTAAATGATGCAGCTTTACTAAGATCGGGAGTAAATTCTGGGGCTTTGGGCTTATCCAACTCAGGATCACTTCGAAGTGATCGATCATCTGAAGTGCTGACATCATCTGAGAAGCAGATAGCCTATCATACTTGTGTTGCTTTACGGCAATACTTCAGAGCTCATCTCCTTTTGTTAATAGATTCCATTCGTCCAAACAAAAGCAATCGTAGTGCTGCCAGGAATACTCCAAGTGTGAGGGCAGCATACAAGCCACTTGACATTAGCAATGAGGCAATGGATTCTGTATTCCTACAATTACAAAAAGATCGGAAGCTGGGTTCTGCATTTGTGAGAACACGTTGGCCAGCAGTTGATAAGTTCTTGGCGTGTAATGGACACATTACTATGCTGGAATTGTGTCAGGCCCCACCTGTGGAACGGTATCTGCATGATTTGCTTCAGTATGCATTGGGTGTTCTTCATATTGCTACATTGGTACCTAGCAGTCGCAAGATGATTGTAAATGCAACATTAAGTAATAATCGTGCTGGTACTGCTGTCATTTTGGATGCTGCAAATATTTCTAGTAATCATGTGGACCCGGAGATCATTCAGCCTGCTTTAAATGTATTAGTCAACCTTGTTTGCCCTCCACCTTCAATCAGCAACAAACCAGCTTTGGTTACACAAGGCCAGCAGTCTGCTTCTGCCCAAACCTCAAATGGTGATAGAACTGCTGAACGAAATGTCTCAGATCGAACTGTTACTATTTCCAGTCAGACTGATCCTAGAGAGCGGAATGGGGAATCTAGTGCTGTAGATCGAGACAATGCTGCAGTGATTAGTACACAAACTGTTAATAGCACCCCACAGACTCCTGTTCCGGCTGCTACTTCAGGATTGGTTGGAGACCATAGAATATCTCTGGGTGCCGGAGCAGGCTGTGCTGGCCTGGCTGCACAACTGGTACAAGGATATCGTCAAGCAAGAGAGGCTGTTCGTGCTAATAATGGAATAAAGGTTCTTTTGCATCTCCTCCAACCACGCATATATTCACCTCCTGCTGCTCTGGATTGTCTTCGTGCTCTAGCATGTCGAGTGCTGCTTGGTTTAGCCAGAGATGATACTATTGCACACATATTGACAAAGCTACAGGTTGGGAAGAAGCTGTCAGAACTAATTCGGGATTCAAGCAGCCAGACGCCTGGAACAGAGCAGGGTAGGTGGCAAGCTGAACTTTCCCAAGCTGCAATTGAGTTAATTGGGATTGTCACTAATTCAGGGCGTGCAAGTACATTAGCTGCTACTGATGCAGCTACTCCTACCTTAAGGCGCATAGAAAGAGCAGCTATAGCTGCTGCCACTCCGATAACATACCATTCGAGGGAACTTTTGCTCCTTATCCATGAACACCTACAGGCATCTGGATTGTCTCAAACTGCTTCAAGGTTGCTTAAAGAGGCTCAGTTGAAACCTTTGCCATCATTGGTTGCTCCATCTTCTCTTGCACAACAACCCTCCACACAGGAAGCTCCTCCAGTACAACATCAGTGGCCTTCTGGTCGTGCTCCTGGATTTCTGTCCAACAAATTAAAGCTTAATACAAGGGATGGGGATGCCAGCACAAAGATTGATTCAGCTTTCTCTTCAAAGAAAAAATCATTGATTCTCTCTTCTTCCTTTGGTTCTAATTCAAGACATCAACTTGTTGATTCTCGGCAGTCATCTGTCAGAAAATGCTTAGGTACTGGTAAAGAGTCATCAGAAACTACAACAGTATTAGAGACTCCATCAGAACCTTTGGTGAAACATAACATTGATGCTGAATCTCAGTATAAGACTCCAATCATCTTGCCCATGAAACGTAAACTATCTGATTTAAAGGATATAGGAGTGTTGTCATCATCTGGAAAACGACTACATGCTGGGGATCAAGGAATTCGTTCTCCTCTTTGTCCAACTCCAAATGCCGTTCGTAAAAGTAATCTGCTGACTGATGCTATTGGGCTTTCTACACCAAGTTCCAGCCTGAGAAATCAACAAGGACGTTGTACAGCTGACCATGTGGATGAGAATCAAAACAGTATGTCAAATCTAGGTCAGGTTACACCATCCTCCCTAGTAATAAATGATCTTCAGCCCAACAACCCAGAGCGTACAACATTAGATTCTCTTGTGGTTCAGTATCTGAAGCATCAGCACCGCCAATGCCCAGCTCCTATTACCACTCTTCCTCCGCTCTCTCTTTTACATCCTCATGTTTGTCCTGAACCCAAGCGAAGCCTTGATGCACCTTCTAATGTGACAGCTCGTCTTGGTACACGTGAATTCAAATTTATATATGGTGGAGTGCATGGGAATCGCAGGGATCGTCAATTTGTTTATAGCCGATTCAGACCATGGCGTACTTGTCGTGATGATGCTGGTGCCTTATTAACATGCATTACGTTCATTGGGGACTCTTCTCATATTGCTGTTGGGAGCCACAATGGAGAGCTCAAACTTTTTGACTCTAACAACAACAATGTGGTGGAGAGCTCCACAGGTCATCAGTATCCATTGACACTTGTTCAGTCTTTTGTTTCTGGTGAGACCCAGCTGTTGCTTTCTTCAAGCTCCCAAGATGTAAGGTTGTGGGATGCTTCATCAATTTTGAGTGGTACTACCCATTCATTTGATGGGTGCAAGGCTGCTAGGTTTAGCAACTCTGGGAGTGTTTTTGCAGCCTTGCCATCGGAATCTACACCACGGGAAATCCTCTTGTACGATATCCAGACATGTCAGCTAGAGTCGAAGTTGTCGGATACTTCTACAAATTTCACAGGTCGGGGTCATGTTTACTCTTTAATCCATTTTAGCCCCTCTGACTCGATGCTGCTTTGGAATGGTGTCTTGTGGGACCCACGGGTGTCTGGGCCTGTTCATCGCTTTGACCAGTTCACAGACTATGGTGGCGGAGGCTTTCATCCTGCTGGCAATGAGGTTATTATAAACTCTGAAGTCTGGGATCTGCGCAAGTTCAGACTGCTCCGTAGTGTGCCTTCATTAGATCAAACATCAATAACATTTAATGCTCGGGGCGATGTGATATATGCTATCCTAAGGAGAAATATTGAGGATGTAATGTCAGCAGTCAACACACGTCGTGTCAAGCATCCTCTTTTTTCAGCTTTCCGCACGGTGGATGCAGTGAATTATTCTGATATTGCTACAATCCCAGTGGATCGCTGTGTTCTTGATTTTACAACTGAGCCAACAGATTCTTTTGTTGGGTTGGTGACGATGGATGATCAAGATGAGATGTATGCGTCAGCTAGAACCTATGAAATTGGTCGTCGGAGGCCAACCGATGATGATTCTGATCCTGATGATGCAGAAAGCGAGGAGGAAGATGAAGAGGACGATGATGATGCTGATGTGGATCCTCTTCTAGGCCCTGGTTTTGGTGGAGACAGTGATAGTGATGCTGATGACATAAGTAACGATGATAGTGTAAGTGAGCTTGATGATGAAGATGGAGATTTCATTATGGATGATGGAGACTTCGATGGAGGAACTGGCATATTGGACATTGTGACAGAAGGTGACGAGGATGATGATGATAGTCAATTATTTGAATCTTTTAGTAGTGGCGAAGAAGATTTTGGCTTCGAGTATTAA 5853 0.4432 MDDEANQNQDQVPPLESHSHDGDGEEDEEEEEEEEEEEESKKEEEEMIAKANKLMEKITCAPDNPKPTVLHALASILEIQESRYMEENDYSSSSNARASHNIGRLGSLIRENDEFFELISSKFLSETRYNTSIRAAAARLLLCCSLTWIYPHVFEESVLENIKHWVMDANANLSAEEQNLKRNPARKEASDSEMLKTYSTGLLAVCLAGGGQVVEDVLTSGLSAKLMRYLRLRVLGETSSSQKDTNPLTDSRHASGNTSMRGRDDGRNRFRQVLESSHFDDTRVIDERSSDDRILERDPDKSISGQTCQEDSRIDGEPPDGLSEGAGICDVDTDGEDRWHCRDTRDGRIKFGDQEDNARDDSSRRRVNRGWGRSRGKGRVNEGNVESEPVLSSPGSGSRSVQGKGVRDRSMLKNVDIRMVPDSKKNVSRISSEANVLDRDDNDDCFQECYVGSKDFSDLVRKAVQGAKAEARSANAPEEAVKAAGDAAAELVKTAASEEFKSTNDEEAAVLAASKAASTVIDAASAVEVSMSSISINKESENEGVQDTQSGEEVEDYFIPDTQSLLQLREKYCIQCLELLGEYVEVLGPVLHEKGVDVCLALLQQNSKHQEVSKVALLLPDVMKLICALAAHRKFAALFVDRGGMQKLLAVPRMAQTFFGLSSCLFTIGSLQGIMERVCALSSDVIYHLVELALQLLECNQDQARKNAALFFAAAFVFRAVLDAFDAQDGLQKLLGLLNDAALLRSGVNSGALGLSNSGSLRSDRSSEVLTSSEKQIAYHTCVALRQYFRAHLLLLIDSIRPNKSNRSAARNTPSVRAAYKPLDISNEAMDSVFLQLQKDRKLGSAFVRTRWPAVDKFLACNGHITMLELCQAPPVERYLHDLLQYALGVLHIATLVPSSRKMIVNATLSNNRAGTAVILDAANISSNHVDPEIIQPALNVLVNLVCPPPSISNKPALVTQGQQSASAQTSNGDRTAERNVSDRTVTISSQTDPRERNGESSAVDRDNAAVISTQTVNSTPQTPVPAATSGLVGDHRISLGAGAGCAGLAAQLVQGYRQAREAVRANNGIKVLLHLLQPRIYSPPAALDCLRALACRVLLGLARDDTIAHILTKLQVGKKLSELIRDSSSQTPGTEQGRWQAELSQAAIELIGIVTNSGRASTLAATDAATPTLRRIERAAIAAATPITYHSRELLLLIHEHLQASGLSQTASRLLKEAQLKPLPSLVAPSSLAQQPSTQEAPPVQHQWPSGRAPGFLSNKLKLNTRDGDASTKIDSAFSSKKKSLILSSSFGSNSRHQLVDSRQSSVRKCLGTGKESSETTTVLETPSEPLVKHNIDAESQYKTPIILPMKRKLSDLKDIGVLSSSGKRLHAGDQGIRSPLCPTPNAVRKSNLLTDAIGLSTPSSSLRNQQGRCTADHVDENQNSMSNLGQVTPSSLVINDLQPNNPERTTLDSLVVQYLKHQHRQCPAPITTLPPLSLLHPHVCPEPKRSLDAPSNVTARLGTREFKFIYGGVHGNRRDRQFVYSRFRPWRTCRDDAGALLTCITFIGDSSHIAVGSHNGELKLFDSNNNNVVESSTGHQYPLTLVQSFVSGETQLLLSSSSQDVRLWDASSILSGTTHSFDGCKAARFSNSGSVFAALPSESTPREILLYDIQTCQLESKLSDTSTNFTGRGHVYSLIHFSPSDSMLLWNGVLWDPRVSGPVHRFDQFTDYGGGGFHPAGNEVIINSEVWDLRKFRLLRSVPSLDQTSITFNARGDVIYAILRRNIEDVMSAVNTRRVKHPLFSAFRTVDAVNYSDIATIPVDRCVLDFTTEPTDSFVGLVTMDDQDEMYASARTYEIGRRRPTDDDSDPDDAESEEEDEEDDDDADVDPLLGPGFGGDSDSDADDISNDDSVSELDDEDGDFIMDDGDFDGGTGILDIVTEGDEDDDDSQLFESFSSGEEDFGFEY* 1951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01843 1950 MobiDBLite consensus disorder prediction 281 304 - -
Rops9g01843 1950 SMART Lish 1191 1223 IPR006594 GO:0005515
Rops9g01843 1950 MobiDBLite consensus disorder prediction 1837 1950 - -
Rops9g01843 1950 MobiDBLite consensus disorder prediction 238 267 - -
Rops9g01843 1950 MobiDBLite consensus disorder prediction 956 1009 - -
Rops9g01843 1950 MobiDBLite consensus disorder prediction 281 411 - -
Rops9g01843 1950 MobiDBLite consensus disorder prediction 1886 1910 - -
Rops9g01843 1950 MobiDBLite consensus disorder prediction 1923 1938 - -
Rops9g01843 1950 MobiDBLite consensus disorder prediction 1231 1260 - -
Rops9g01843 1950 MobiDBLite consensus disorder prediction 238 256 - -
Rops9g01843 1950 Gene3D - 1529 1853 IPR015943 GO:0005515
Rops9g01843 1950 MobiDBLite consensus disorder prediction 1231 1246 - -
Rops9g01843 1950 ProSiteProfiles LIS1 homology (LisH) motif profile. 1191 1223 IPR006594 GO:0005515
Rops9g01843 1950 SMART WD40_4 1528 1568 IPR001680 GO:0005515
Rops9g01843 1950 SMART WD40_4 1571 1611 IPR001680 GO:0005515
Rops9g01843 1950 Coils Coil 24 61 - -
Rops9g01843 1950 MobiDBLite consensus disorder prediction 1 46 - -
Rops9g01843 1950 SUPERFAMILY ARM repeat 547 1130 IPR016024 -
Rops9g01843 1950 FunFam DDB1-and CUL4-associated factor homolog 1 1526 1853 - -
Rops9g01843 1950 MobiDBLite consensus disorder prediction 1837 1851 - -
Rops9g01843 1950 SUPERFAMILY WD40 repeat-like 1530 1762 IPR036322 GO:0005515
Rops9g01843 1950 MobiDBLite consensus disorder prediction 956 997 - -
Rops9g01843 1950 MobiDBLite consensus disorder prediction 331 368 - -
Rops9g01843 1950 MobiDBLite consensus disorder prediction 1852 1872 - -
Rops9g01843 1950 MobiDBLite consensus disorder prediction 386 400 - -
Rops9g01843 1950 PANTHER VPRBP PROTEIN-RELATED 38 1945 IPR033270 GO:0016567
Rops9g01843 1950 MobiDBLite consensus disorder prediction 22 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01843 Rops-Chr9 33229622 33239926 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01843 1555 1761 U-box Gene Family AT2G33340 25.893 1.14e-07 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01843 K11789 - gmx:100796030 2741.45