Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01816 ATGTTCTCCAGCAGCCAATTCGATGCAACCTCCGCCTTCTCCGGCGGTGGATTCATGTCCTCGCAACCCAACGATTCCTCCCAAGCGGCACCGCCAAAAAGCCGCGAAACTCAGGGTTTGATTCCAGTGACAGTGAAGCAGATCAGTGAAGCCTCTCAATCTGGCGATGAAAAGTCGAGTTTTATGATCAACGGTGTAGATCTGACCAATGTTACATTGGTTGGAATGGTGTTCGAGAAAGCTGAGAGAAACACAGATGTTAATTTTGTGTTAGATGATGGAACAGGACGAATCAAATGTCGAAGATGGATCAATGAGACTTTCGACACAAAGGAAATGGAAGAAATAATGGATGGTACGTATGTTCGTGTTTATGGGCATTTGAAAAGCTTTCAAGGTGTGAGGCAACTTGTTGCCTTCTCTGTCAGGCCTGTGACGAATTTTGATGAGATCTCTTTTCACTTTATTGATTGCATACATAACCACCTCCGCACCAAAGTAAAGATGGAAGGAATCACTTCTGCACATCCTTCATCAGACTCATCATTGAACACTCCTGTCAAAAATGCATCAAATGGATCTGGGGCACCATCTTCAAATCCAGTGTATGCACAATATAGCGTTGATGGACTCAAGGATTGTGATAAACTGGTTATCGACTATCTGCAGCAACATTCAGACATGTCAGATGAACGGGGAATACATGTTAATGAACTATCTCGAGAGCTCAAGCTCCCGTTGGACAAGATCATGTTGTCGCTAAAGACTCTTGGAGATGATGGTTTAGTATACTCCACCATAGATGACTTCCATTACAAACAAGCTTGA 828 0.4348 MFSSSQFDATSAFSGGGFMSSQPNDSSQAAPPKSRETQGLIPVTVKQISEASQSGDEKSSFMINGVDLTNVTLVGMVFEKAERNTDVNFVLDDGTGRIKCRRWINETFDTKEMEEIMDGTYVRVYGHLKSFQGVRQLVAFSVRPVTNFDEISFHFIDCIHNHLRTKVKMEGITSAHPSSDSSLNTPVKNASNGSGAPSSNPVYAQYSVDGLKDCDKLVIDYLQQHSDMSDERGIHVNELSRELKLPLDKIMLSLKTLGDDGLVYSTIDDFHYKQA* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01816 275 PIRSF RPA32 1 275 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Rops9g01816 275 Gene3D - 205 275 IPR036388 -
Rops9g01816 275 SUPERFAMILY "Winged helix" DNA-binding domain 209 273 IPR036390 -
Rops9g01816 275 FunFam Replication protein A 32 kDa subunit 206 275 - -
Rops9g01816 275 MobiDBLite consensus disorder prediction 1 39 - -
Rops9g01816 275 Pfam OB-fold nucleic acid binding domain 71 143 IPR004365 GO:0003676
Rops9g01816 275 PANTHER REPLICATION PROTEIN A-RELATED 6 273 IPR040260 -
Rops9g01816 275 Pfam Replication protein A C terminal 179 269 IPR014892 -
Rops9g01816 275 MobiDBLite consensus disorder prediction 174 199 - -
Rops9g01816 275 FunFam replication protein A 32 kDa subunit A-like 33 167 - -
Rops9g01816 275 SUPERFAMILY Nucleic acid-binding proteins 40 164 IPR012340 -
Rops9g01816 275 Gene3D - 33 166 IPR012340 -
Rops9g01816 275 CDD RPA2_DBD_D 70 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01816 Rops-Chr9 32582049 32591570 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01816 1 273 Core DNA Replication Machinery Family AT2G24490 48.936 1.38e-94 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01816 K10739 - gmx:100802512 452.21