Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01812 ATGCCTGGATTAACGTGCAACGCTTGCAACACGGAATTCAAGGATGATGCAGAGCAAAAGCTTCATTACAAATCCGAGTGGCACCGCTACAATCTCAAACGCAAGGTGGCCCTGGTTCCAGGGGTGACGGAGGAACTATTTCTGGCTAGACAATCTGCACTTGCTAAAGAGAAAGATAAATCAAATGAAACCCCCATGCTCTATAGCTGTGGCCTTTGTGGCAAGGGTTATAAAAGTTCCAAGGCTCATGCTGAGCATCTTAAATCACGCAGTCATATGATGCGAGTTTCTGAAGGAACTAGTCATTCAGATGAGAAGGCAATAATTAAGCCACTTCCACAACGTGTCGTGAACAGGCCTCCTCCTAGAAGAGAGGTAGATAACTCTGAAAATGAAGAAAGTGAAGATGAATGGGTGGAGGTTGATCCTGAAGATGATTTGGTTAATGATGCCACAAAGTCCTTGACCGATTTGAATGTTAATGAACATGCTGACAATGCTGATATGGATGAAGATAATGATGATGCTTTGGAGGAGTTAGATCCATCATGTTGCTTTATGTGTGATCAAGAGCATGATACAATAGAAAACTGCATGGTTCACATGCTCAAGCACCATGGATTCTTCATTCCAGATGTTGAGTATTTGAAGGATCCGAAAGGCCTCCTTACTTATCTTGGCCTTAAGGTCAAAAGGGACTACATGTGTCTGTACTGCAATGATCGTTGTTATCCTTTCAGCAGCTCGGAAGCAGTCAGGAAACATATGGCTGCAAAAAGTCACTGTAAAGTGCATTATGGTGATGGTGATGATGAGGAGGAAGTAGAGCTTGAAGAATTCTACGATTATAGCAGCAGTTATGTGGATGAGCAAGGCAAGCAGCTAGTTGTATCCGGTGCTACGGATAGCAATATAGAACTTGGTGGTGGGTCTGAGCTCATAATCACTAGGAAATCTGGCGATAGAACTTCAACCAGAACTCTAGGTTCCCGTGAATATTTGCGATATTATCATCAGAAACCACGTCCATCACCAGCAAATATGGCCATCACTGCCGCATTGGCTTCGAGGTACAGAAGCATGGGTTTGGCCACCGTCCAATCAAGGGAGCAAATTGTGAGGATGAAAGTTCTGAAGGAAATGAACAGGTCAGGTGTGGAGCATATGCGTACCAAGATAGCGCTGAAGAATAATGTCATCCGGAATTTGCCAAAGAATTGCCCATATTAG 1230 0.4374 MPGLTCNACNTEFKDDAEQKLHYKSEWHRYNLKRKVALVPGVTEELFLARQSALAKEKDKSNETPMLYSCGLCGKGYKSSKAHAEHLKSRSHMMRVSEGTSHSDEKAIIKPLPQRVVNRPPPRREVDNSENEESEDEWVEVDPEDDLVNDATKSLTDLNVNEHADNADMDEDNDDALEELDPSCCFMCDQEHDTIENCMVHMLKHHGFFIPDVEYLKDPKGLLTYLGLKVKRDYMCLYCNDRCYPFSSSEAVRKHMAAKSHCKVHYGDGDDEEEVELEEFYDYSSSYVDEQGKQLVVSGATDSNIELGGGSELIITRKSGDRTSTRTLGSREYLRYYHQKPRPSPANMAITAALASRYRSMGLATVQSREQIVRMKVLKEMNRSGVEHMRTKIALKNNVIRNLPKNCPY* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01812 409 ProSitePatterns Zinc finger C2H2 type domain signature. 70 92 IPR013087 -
Rops9g01812 409 Pfam C2H2 type zinc-finger (2 copies) 185 286 IPR041661 -
Rops9g01812 409 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 92 IPR013087 -
Rops9g01812 409 SMART ZnF_U1_5 65 99 IPR003604 GO:0003676|GO:0008270
Rops9g01812 409 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
Rops9g01812 409 MobiDBLite consensus disorder prediction 114 141 - -
Rops9g01812 409 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Rops9g01812 409 PANTHER ZINC FINGER PROTEIN 622 2 408 IPR040025 -
Rops9g01812 409 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
Rops9g01812 409 SUPERFAMILY beta-beta-alpha zinc fingers 170 250 IPR036236 -
Rops9g01812 409 SMART c2h2final6 234 261 IPR013087 -
Rops9g01812 409 SMART c2h2final6 4 28 IPR013087 -
Rops9g01812 409 SMART c2h2final6 68 92 IPR013087 -
Rops9g01812 409 SMART c2h2final6 183 205 IPR013087 -
Rops9g01812 409 SUPERFAMILY beta-beta-alpha zinc fingers 67 98 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01812 Rops-Chr9 32536072 32539022 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01812 1 409 C2H2 Transcription Factor Family AT4G31420 66.667 0.0 527
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops9g01812 zf-C2H2_2 4e-25 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01812 K14816 - gmx:100796317 666.766