Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01805 ATGTTGACCGCTCAATTCTTAGAGAATGAAATGTGGAGTTGTGACAGTCACAATAGTTCAGACTCTGAACTCTTTTCTTTTCTCTCTGTTTCCAAGGGAGAAGAAGAACACCACACCGCCGCCGCCACCACCACAACAACAAAAAGTAACCACCCTATTCAAGTTTCTCTACTGAGATTTGAAGGTAATAAACAATTGATGGATGAGTATTCTGGTAAAAGAGGCATTGATGGGGTGGTAGTCCCTAGAAAAGGGACGGGTCTTATGTTTAGAGATACTGCTAATAATAGAGATCGAAATGGTCAAATTTGCAGCCAAGTAGGTTCCAGTAGTAAAGCCAACTCTCCTAAAGTTGCCCAAGTTGGATCATCCAAAAAAGATTCATCTGAAACTAGTAGTGTAAAGGATGAACCAGAATTTTCAGAGCTCACTCCTCCACCAGAAAAAAATCCAAGAGGGCTTAATGCTGAAGGGGAAAGCACAGAGTCTACTAATATGACGCGGATGGAAGTAGGAAGCTCTAGTGTAGTATCAAACACAAGATCTCAAAGAAATTTTCATCAAAGGCCTGGATTGCGTCAGCAAGAATTCAAAAGCACTGGTCCATTGACACGTGCTGTTACTAGCAGGTACGGGCTGAGGAACCTCAGATGCAACTCTATATCTGACATCATACCAGCTGGTTGCCCATCATCAGATTCATCCCTTAATAGAAGGAAGGGTATGATAAAAAAGAGAAACTGTGAAGGGGAGAGTAGTTCCACTGTTAGAGGGAAGAAGATGACTGGGTCTTCATTGGAAGGACCCAATTCTGGCTCCAGAAATGGCATATCTATATCTGATTCAAGAAGATCTAGAAATATTCCTTCTCATAGGGACAGCAGCATGGCATCAGTTAGAGCTCAAAGATCAATTAGTGGTAATGGCAGGGGAAGATTATCTAGCCAAGGAAATGAAAACCCTATGGCAACCAATGAGCCCCGTGTTATGATACCTCTTTTGCCTCATTCTGGTGATCTTAATGCTCCTGGCATTTCATATCGTACTTCTGTAGAGACTCCCTTAAGTCATTCAAGCTCTTATAGTAGACCAGGTACTAGCAGTGAGCAGTTATGTGGTGTTATGCCTGTGTCTCCTGCAGAATATGGCATCACTCATTCTCTAATAAATCGGGATAGCTTTCGGCGCTACAACATGGATTGTATTGCAGAGGTATTATTGGCACTTGAGAGGATTGAACAAGATGAAGAGCTAACCCATGAGCAAATTCTTTTACTAGAGACCAACTTGTTCCTTAATGGATTAAACTTCCATGATCATCATAGAGACATGCGGTTGGATATTGATAACATGTCATATGAGGAACTTTTAGCTCTGGAAGAGCGGATGGGTACTGTGAGCACAGCTCTAACAGAGGAAGCACTTTCAGAATGCCTTAAAAGAAGTATCTATCAGTCTGCACCTTCAGATGACGCAGCTGAGAATTTTAACGAGGATAAGGATGATATCAAATGCTGCATTTGCCAGGAGGAATATGCTGTTGGAGATGAAGTTGGGACTCTGAAATGCGATCATAAATTTCATGTAGTTTGTATACAGGAGTGGCTGCGGCTGAAGAACTGGTGTCCTATCTGCAAAGAATCAGCGGCACCGTCCAATTCATCTTCACCCCATTGA 1677 0.4228 MLTAQFLENEMWSCDSHNSSDSELFSFLSVSKGEEEHHTAAATTTTTKSNHPIQVSLLRFEGNKQLMDEYSGKRGIDGVVVPRKGTGLMFRDTANNRDRNGQICSQVGSSSKANSPKVAQVGSSKKDSSETSSVKDEPEFSELTPPPEKNPRGLNAEGESTESTNMTRMEVGSSSVVSNTRSQRNFHQRPGLRQQEFKSTGPLTRAVTSRYGLRNLRCNSISDIIPAGCPSSDSSLNRRKGMIKKRNCEGESSSTVRGKKMTGSSLEGPNSGSRNGISISDSRRSRNIPSHRDSSMASVRAQRSISGNGRGRLSSQGNENPMATNEPRVMIPLLPHSGDLNAPGISYRTSVETPLSHSSSYSRPGTSSEQLCGVMPVSPAEYGITHSLINRDSFRRYNMDCIAEVLLALERIEQDEELTHEQILLLETNLFLNGLNFHDHHRDMRLDIDNMSYEELLALEERMGTVSTALTEEALSECLKRSIYQSAPSDDAAENFNEDKDDIKCCICQEEYAVGDEVGTLKCDHKFHVVCIQEWLRLKNWCPICKESAAPSNSSSPH* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01805 558 FunFam E3 ubiquitin-protein ligase arkadia 467 551 - -
Rops9g01805 558 Pfam Ring finger domain 504 546 IPR001841 -
Rops9g01805 558 MobiDBLite consensus disorder prediction 156 203 - -
Rops9g01805 558 MobiDBLite consensus disorder prediction 90 203 - -
Rops9g01805 558 MobiDBLite consensus disorder prediction 291 323 - -
Rops9g01805 558 MobiDBLite consensus disorder prediction 129 143 - -
Rops9g01805 558 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 483 554 IPR013083 -
Rops9g01805 558 ProSiteProfiles Zinc finger RING-type profile. 505 546 IPR001841 -
Rops9g01805 558 MobiDBLite consensus disorder prediction 225 325 - -
Rops9g01805 558 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 125 550 IPR045191 GO:0061630
Rops9g01805 558 SUPERFAMILY RING/U-box 499 549 - -
Rops9g01805 558 MobiDBLite consensus disorder prediction 238 253 - -
Rops9g01805 558 SMART ring_2 505 545 IPR001841 -
Rops9g01805 558 MobiDBLite consensus disorder prediction 93 128 - -
Rops9g01805 558 MobiDBLite consensus disorder prediction 254 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01805 Rops-Chr9 32385946 32398616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01805 402 549 C3H Transcription Factor Family AT2G15530 44.595 2.05e-37 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01805 - - gmx:100812055 676.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01805 9 32385946 32398616 Rops9g01805 9 32385946 32398616 ECH