Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01744 ATGCAAAAGGACAAGGAAGCTGTTACCAAAGAGGGGAAGGATATGGAAATGGAAGAAGGGTCTCTTGCAAAGGAGGAAACCCTACCACCGGGATTTCGATTTCATCCGACCGATGAAGAACTCATCACTTACTACCTCATAAACAAAATTTCAGATTCTAGTTTTACAGGCAAAGCAATAGCTGATGTAGATCTCAACAAGTGCGAGCCATGGGAACTGCCAGGGAAGGCGAAGATGGGGCAAAAGGAATGGTACTTCTTCAGTCTAAGAGATCGTAAATACCCCACAGGTGTGAGAACCAATCGAGCTACCAACACAGGGTACTGGAAAACCACAGGTAAAGACAAGGAGATCCTGAATAGTGTTACATCAGAAATGGTTGGTATGAAGAAGACTTTGGTTTTCTACAAAGGGAGGGCTCCCAGAGGAGAGAAAACCAACTGGGTCATGCATGAATACCGCATTCATTCAAAATCTAGCTTCAGAAACAACAAGCGGGATGAATGGGTGGTTTGCAGGGTATTCCGTAAGAGTGCTGGTGCAAGAAAGTACCCCTCTTCCAACCCTACCAGAGCAGTGAATCCTTATAATATGGAAGTTGGTCCTAGTATTGTGCCACCACCAATGATGCAGCCAGGAGATCCTGCTGCTCATTTCCTTTATGGAAGGAACTACATGAACAATGCAGAGATAGCTGAAATTACTAGGGTTTTAAGAGGTGATGGATCAACCAGTGTCAACCTACCAATGCAGCCCCATTTGAGCTACCCAATATCATCAGCACCAGGAGGAGGATTCACCATTTCAGGGCTTAATTTGAATCTTGGAGGAGGAGGAGCAGAAGCCACAACACAACCCATTTGGCGTCCAATGCCACCACCACAGCACTCTCTTTCTAACACCATGGCTCAAGTGCATGATTTCAGTTGCAACATGATGACACCAAGTAGTACCCTTGCATTCTCTAATGTAGGGTATGGTACAGAAATGGGCAATGCAAATCCACATGGCAATAGGTACATGGGTATGGACCATTGCATGGATCTAGATAATTACTGGCCTTCTTACTAA 1071 0.45 MQKDKEAVTKEGKDMEMEEGSLAKEETLPPGFRFHPTDEELITYYLINKISDSSFTGKAIADVDLNKCEPWELPGKAKMGQKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEILNSVTSEMVGMKKTLVFYKGRAPRGEKTNWVMHEYRIHSKSSFRNNKRDEWVVCRVFRKSAGARKYPSSNPTRAVNPYNMEVGPSIVPPPMMQPGDPAAHFLYGRNYMNNAEIAEITRVLRGDGSTSVNLPMQPHLSYPISSAPGGGFTISGLNLNLGGGGAEATTQPIWRPMPPPQHSLSNTMAQVHDFSCNMMTPSSTLAFSNVGYGTEMGNANPHGNRYMGMDHCMDLDNYWPSY* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01744 356 Pfam No apical meristem (NAM) protein 29 155 IPR003441 GO:0003677|GO:0006355
Rops9g01744 356 SUPERFAMILY NAC domain 23 177 IPR036093 GO:0003677|GO:0006355
Rops9g01744 356 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 25 227 - -
Rops9g01744 356 Gene3D NAC domain 37 181 IPR036093 GO:0003677|GO:0006355
Rops9g01744 356 MobiDBLite consensus disorder prediction 1 32 - -
Rops9g01744 356 MobiDBLite consensus disorder prediction 1 23 - -
Rops9g01744 356 ProSiteProfiles NAC domain profile. 28 177 IPR003441 GO:0003677|GO:0006355
Rops9g01744 356 FunFam NAC domain-containing protein 100-like 37 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01744 Rops-Chr9 30817313 30820291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01744 17 356 NAC Transcription Factor Family AT2G24430 52.500 1.24e-115 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops9g01744 NAM 5.2e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01744 - - gmx:100804931 572.007