Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01718 ATGAACGGTGACGGGAAAATGCCCACCCAGTCGGACGGGCTCATTGATGGTGTTCAGAAGATTAGAGCATTGCAGGGGAGGACTACTGGTCCTACAAGGCGTTCTACAAAAGGGCAATGGACACCTGAGGAGGATGAGATCTTGCGGAAGGCTGTTCAGCATTTCAAAGGAAAAAATTGGAAAAAGATAGCGGAGTGTTTCAAGGATAGAACTGATGTACAATGCTTACATAGGTGGCAGAAAGTCTTAGATCCTAATCTTGTTAAAGGTCCATGGTCTAAAGAGGAAGATGAAGTAATTATTGAAATGGTGAACAAATATGGGCCTAAAAAGTGGTCAACTATTGCCCAATATTTACCTGGACGTATTGGTAAGCAATGTCGTGAAAGGTGGCATAATCATCTTAATCCTGCTATAAACAAGGAAGCATGGACACAGGAAGAGGAGTTGGCTCTAATACGTGCTCATCAGATTTATGGGAATAGATGGGCAGAATTAACGAAGTTTTTGCCTGGAAGGACAGATAATGCGATTAAAAACCACTGGCACAGTTCTGTCAAAAAGAAATTGGATTCTTACATGGCATCAGGCTTGCTTACTCAGTTCCAATCTGTACCAAATGTTGGAAATCCAAGTCAATTGATGGCTACAACATCTTCGAGGTTGCAATATAGTGGAGATGACAATGGTCCCAAGGGCACTGAAGGAGAGGAAGTTTCGGAGTGTAGCCAAGAGTCAGCTAATGCTGTTCACTTTCCATCTGCTGGGGAGATGAGCAATGTTGACTTAAAAACTGGAGAGGAATATAGGCCAAATGGAGAATGTAATCTGGGAAAGGGTCACAGTACAAATCAAGCATCTTGTTCAGAGCCATATTATGTATCAATTGATGATGTCACTATATGCATCCCAGAAATTGCTCGCCAAGAGTCATGCTCTTCTGAATTCATTGAGCAACAATACTCACATGAACCTGGAAATTCCAGTAATGGGGATTGCCTGTTTAATTTACATTCCTTACCCAATATTTCATCAATGAACTTGGGACAGGAATCCTCGCAGTTGCAAAGAGATTATACAGCTCCTAATGAAATCCGTGACATGATGAATGTTTCATGTCAGACTTCAGTGGGGTTAGGTGTTTCAACATCTGTGCATTCCGCCAAAGCAGAGCACATGTTGATATCTGATGATGAATGTTGCAGATTACTATTTCCAGGGGCAATGAATGATGGATGCTTTTCCCCCAGAGATTATAATAAAGGTGTGGATATGGTTGAATTTTCTGGATGTTCTTCATTTCTTTGTCAATCATGTCATATTCTAATATCTGAAACTGATGGTGCCTCAACTCCCCTGCTAACTTGTCCTCATTGTTCTTCATTTCTTTGTCAATCATGTCATATTCCGATATCTGAAACTGATGGTGCCTCAACTCCCCTGCTAACTTGTCCTCATTGTTCTAATAATTTTAAAGGAATGTCATCCTCCCAATCTGTCCCTACAGTACTTTCTGCTGGTGATAATAGGCTGGTGTATACTGCCAAAGACAATCAGTTATTTGGGCCTGAGGATCAGCAGTTTATCTCCAGTGCACCTGATAATGTCACTTATGCCCATGACATATCCAGTTCTCCTTGTATTGAAGGTATAGATAGTGCAGTAATGCAAGAACCACCAGATATTCTGAAGGATTCTTCAAAATTGGTCCCTGTAAATAGCTGTGGATCTGATGCTAAGCAAACCTGTTATCCAACAGATGGAAGGCCAAATGTGCACGTAGAAAATGAGGACACAGGAGCCCTATGTTATGAACCTCCCCGTTTTCCAAGTTTGGATATTCCTTTCTTCAGCTGTGATCTTGTACAATCTGGGGGTGATATGCAGCAAGAATTCAGTCCCCTGGGTATCCGCCAGTTTATGATGTCTTCTATGAGCTGTCTAACTCCTTTAAGGTTGTGGGACTCACCCTCTCATGATGATAGTCCAGAAGCATTACTGAAAAGTGCAGCTAAAACTTTTACGGGTATACCATCCATATTAAAGAAACGACATCGAGATTTGTTATCGCCACTCTCAGATAAAAGAATTGATAAGAAACTTAAGACTGACATGACATCCACCTTGGCCAATACTATTTCCAGTTTGGATGCCATGTTTGATGACACTGAGACTCAGGAAGCAGATATGCTTTCTTCATCTTTGTTGCAAAAACGGAAATCAGAGGCTTTTGTTCATGATGATGATAAAGAAAATTGTGGACAAGCTTTTAAAGGGGAACAAGAAGCGGACACAGTCAAATCTGCAATTTTGGAAGAAAAGAACTCTCAAAGAGATACTGTTGACATTAATTCTCAGGATAAGGTCAAGCAGCAACCTCTTGATGTTGATTCTAAGATGAAGATTGATGCTGCTGCTGCTGCTGAGATTGTGCAACAACCTTCTGGAGTTTTAGTTGAACATGATATGAATGACCTGTCACTGTATTCTCCTGATCAAGTTGGTTTTAAATTAGACAGAGTTCTGGGTTCAAGTGCTAAAACTCCCAAAAGCTTGAACAAGAGGAGTTCGGAAACGGCTCCAAACCAGAGCATCTCTTCAAAATTAGCTTCTGAAAATCCATGCTCAAGGGTTAACGCTTCTTGTGTTCGTGCAAAAGAGCATGAAAGACTTTCAGTTGCTGTTACTTGTGTAAAAGCTCCAGGGGAGAATTCAGGGGATCAAACCAGAAACAATGCTTGTTTTGAAACATGTAGCATATTTGGTGGAACACCTTTTAGGAAAAGCATTGAATCACCTTCTGCGTGGAAATCTCCTTGGTTCATCAATTCTTTTCTGTCCAGCCCCAGATTTGATCCTGAAATTACAATTGAGGATTTTGGGTATCTCATGAGCCCAGGTGATAGAAGCTATGACGCAATCGGGTTGTTAAAACAGATCAGCGAACAAACTGCTGCCACATATGCCAATGCTCAGGAGATTTTGGGTAATGAAACTCCTAAGGTGTTACCAGAAGATGCATCTGGAAATGATAAGAATAGAAACCGGGAAAATAATGATCCTCCCAAGCAGCCTGGGAACCATTCTAAGCTGGCTTCAAATGCTCTGATGGAGCGACGCGTACTTGACTTTAGTGAATGTGGAACACCGGACAAAGGTGATAACAGCAAATCCTCAGCTATGAGCTTCTCAAGCCCTTCTTCGTATTTGTTGAAGGGTTGTAGATAG 3228 0.4139 MNGDGKMPTQSDGLIDGVQKIRALQGRTTGPTRRSTKGQWTPEEDEILRKAVQHFKGKNWKKIAECFKDRTDVQCLHRWQKVLDPNLVKGPWSKEEDEVIIEMVNKYGPKKWSTIAQYLPGRIGKQCRERWHNHLNPAINKEAWTQEEELALIRAHQIYGNRWAELTKFLPGRTDNAIKNHWHSSVKKKLDSYMASGLLTQFQSVPNVGNPSQLMATTSSRLQYSGDDNGPKGTEGEEVSECSQESANAVHFPSAGEMSNVDLKTGEEYRPNGECNLGKGHSTNQASCSEPYYVSIDDVTICIPEIARQESCSSEFIEQQYSHEPGNSSNGDCLFNLHSLPNISSMNLGQESSQLQRDYTAPNEIRDMMNVSCQTSVGLGVSTSVHSAKAEHMLISDDECCRLLFPGAMNDGCFSPRDYNKGVDMVEFSGCSSFLCQSCHILISETDGASTPLLTCPHCSSFLCQSCHIPISETDGASTPLLTCPHCSNNFKGMSSSQSVPTVLSAGDNRLVYTAKDNQLFGPEDQQFISSAPDNVTYAHDISSSPCIEGIDSAVMQEPPDILKDSSKLVPVNSCGSDAKQTCYPTDGRPNVHVENEDTGALCYEPPRFPSLDIPFFSCDLVQSGGDMQQEFSPLGIRQFMMSSMSCLTPLRLWDSPSHDDSPEALLKSAAKTFTGIPSILKKRHRDLLSPLSDKRIDKKLKTDMTSTLANTISSLDAMFDDTETQEADMLSSSLLQKRKSEAFVHDDDKENCGQAFKGEQEADTVKSAILEEKNSQRDTVDINSQDKVKQQPLDVDSKMKIDAAAAAEIVQQPSGVLVEHDMNDLSLYSPDQVGFKLDRVLGSSAKTPKSLNKRSSETAPNQSISSKLASENPCSRVNASCVRAKEHERLSVAVTCVKAPGENSGDQTRNNACFETCSIFGGTPFRKSIESPSAWKSPWFINSFLSSPRFDPEITIEDFGYLMSPGDRSYDAIGLLKQISEQTAATYANAQEILGNETPKVLPEDASGNDKNRNRENNDPPKQPGNHSKLASNALMERRVLDFSECGTPDKGDNSKSSAMSFSSPSSYLLKGCR* 1076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01718 1075 CDD SANT 91 135 IPR001005 -
Rops9g01718 1075 FunFam Transcriptional activator Myb isoform A 89 141 - -
Rops9g01718 1075 MobiDBLite consensus disorder prediction 996 1075 - -
Rops9g01718 1075 Gene3D - 142 204 - -
Rops9g01718 1075 MobiDBLite consensus disorder prediction 1005 1023 - -
Rops9g01718 1075 MobiDBLite consensus disorder prediction 22 41 - -
Rops9g01718 1075 ProSiteProfiles Myb-like domain profile. 136 186 IPR001005 -
Rops9g01718 1075 MobiDBLite consensus disorder prediction 847 870 - -
Rops9g01718 1075 FunFam Transcriptional activator Myb isoform A 36 88 - -
Rops9g01718 1075 SUPERFAMILY Homeodomain-like 86 182 IPR009057 -
Rops9g01718 1075 MobiDBLite consensus disorder prediction 221 246 - -
Rops9g01718 1075 ProSiteProfiles Myb-like domain profile. 32 83 IPR001005 -
Rops9g01718 1075 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 190 IPR017930 -
Rops9g01718 1075 CDD SANT 40 83 IPR001005 -
Rops9g01718 1075 MobiDBLite consensus disorder prediction 1051 1069 - -
Rops9g01718 1075 Gene3D - 89 140 - -
Rops9g01718 1075 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 139 IPR017930 -
Rops9g01718 1075 SMART sant 88 137 IPR001005 -
Rops9g01718 1075 SMART sant 140 188 IPR001005 -
Rops9g01718 1075 SMART sant 36 85 IPR001005 -
Rops9g01718 1075 ProSiteProfiles Myb-like domain profile. 84 135 IPR001005 -
Rops9g01718 1075 CDD SANT 143 183 IPR001005 -
Rops9g01718 1075 FunFam Transcription factor MYB3R-2 142 204 - -
Rops9g01718 1075 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 83 IPR017930 -
Rops9g01718 1075 Pfam Myb-like DNA-binding domain 141 183 IPR001005 -
Rops9g01718 1075 Pfam Myb-like DNA-binding domain 89 135 IPR001005 -
Rops9g01718 1075 Pfam Myb-like DNA-binding domain 37 83 IPR001005 -
Rops9g01718 1075 Gene3D - 36 88 - -
Rops9g01718 1075 PANTHER MYB PROTEIN-RELATED 37 122 - -
Rops9g01718 1075 SUPERFAMILY Homeodomain-like 38 93 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01718 Rops-Chr9 30107838 30127735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01718 21 1075 MYB Transcription Factor Family AT4G32730 43.228 0.0 724
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops9g01718 Myb_DNA-binding 5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01718 - K09420 aprc:113848458 1548.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01718 9 30107838 30127735 Rops9g01718 9 30107838 30127735 ECH