Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01702 ATGAATCGGTATCGGAAAAGGTTAGGGAACCCTCGCCGTGTAGTGGTGGTGGACATGTTCGAGGGATACAAGGTGAGAACCCAATTGAAACTAGTGGCGTGTGGTCTTCATCTTCGTCCATCAAAAGGCGGTCTGGAGCTTGGGGCTTTGGTTCAGAGATTCGTCCAAGCAATAAGCATATCGCAACTTAAGTTAATCGTCTTTCTGGGAATTGAAGACATTTCATTGGAGAATGAAGATGAAGTTGTTGGATATGGTGGGGGTGAGTATGTTGAAATTATTGGTGATAATGAGGATGCTGAAGAGGAATATATGGAGGATGTTATGGTGAGTGGAGGATGCAATAGTATGCCGGCACAATTGACAGCAAGATATGATGTTTTGATGCAGATGTATAGAGAGTTAGCAGTTCTTACTTGCATAAATTTTGAGGATTTCTGCATAAAAATGGAGAGGGGTAGGATTGCTATCGAGGGATTAAGAACGAAGGTTGGTGGGATTGATTTGAATGGTGGATGTGTAAGTGGTGGTGAGCAACTTGGTATCGGGGATCCAGTTCGAGTACGTAGCAAAGGAAAATGTGTTTTGGGTCAAACATCTTCATGGTTGAAAAGTTCTTGGAATGATGTATTTGAGGTGGCTGTTGTATTGGACATAATAGGCACATTGGTCTGGCGCATATATGATAGGCCAGATAAATTGCAATTATACGATGAAGATAAAGCAAGTGATGGTATTGAAAATGACAACAAAGATGGAGAAATTACTAGAGATTGTAATTTGCTTGGAAGAGTTGTTCATAATGAAATGGAAGCATTCAAGTTGTACAATGATTATGCCTACTCTGTTGGATTTGGAGTTCGTTGTGGCAAGCAACGTCTTTATGAAAGGACAACACTCATTCGCCAAAAAGAATATGTTTGTCGTAATGAAGGTCAAAAAGGTTCATGGAAGCTTGGAGAGGAGGTTAATAGAAGACTTACAACAAGATGTAATTGCCTTGCAATGATTCGATTTTCGGTTAGCAAAGATGGTTCCATATGGAAGGTTACTAAGCATGTAAAAGAACACAACCATGAGCTTGCAAAACCTGAAGAAAGGCATCTAATAAGGTCTTTTAGAGAGGCGGAATACCTTACAATATTGGCAATGAGATGGATTCAAATGAGTTGTAGTGGAGATGTTTGCACTTATGAAGTGAAGGCGGAAAGAGATAATGCAAAAAGCTATCTAGTAGCTTTCAAGAAAGAAAACTTAGATGTTTCTTGCTCATGTAAGTTCTTTGAAGCAGAAGGCATTTTGTGTAGCCATGCCTTGAAAATTTTGTCACTCCATAATGTCACCATGATTCCTGAGAAATATGTGTTATTAAGGTGGACTAAACAACCAAAGCAAGTGATTTCTTATTCATGGTTGAGTGAGACATCAAGTGAACCCTATAATGGAAATAGTAATGAACCTGAAATCATCTTTCGTAATAGTAGAGCTCGGAGCTCTTATAATATGATCTTACAGTGTGCTACGGATGCAAGAGCAAGGAAGGAGTATGATGTTGCATTTGAACAACTAGTATCAAGATTAAATAATGTTTTAGCAGGCATGGACTTGCATGGAGATGTGAATGAGGGACAAGTTTCAAGAGAAAGACATGAGAAATATATAAAAGAAGTATCAATTAAGAATCCTCCAAAGGCAAGACCCAAGGGTGCACCAAATGTTCGCTTTAAAAGCCATTTGGAAAAATCAAAGCGTAAATTGAGTCCTAGTGAGATGCTTTTGAGCCTTTTGAATGTGGACAATGCAGAGAGATGGAATAGTGGATATCAGTATAGTTTTCCCGCAAGTAATAGGTCCTGCTTGTGCACTGAAAACAAAAGGCAAAGCATCAAAGAACAAAAAGAGTAA 1905 0.39 MNRYRKRLGNPRRVVVVDMFEGYKVRTQLKLVACGLHLRPSKGGLELGALVQRFVQAISISQLKLIVFLGIEDISLENEDEVVGYGGGEYVEIIGDNEDAEEEYMEDVMVSGGCNSMPAQLTARYDVLMQMYRELAVLTCINFEDFCIKMERGRIAIEGLRTKVGGIDLNGGCVSGGEQLGIGDPVRVRSKGKCVLGQTSSWLKSSWNDVFEVAVVLDIIGTLVWRIYDRPDKLQLYDEDKASDGIENDNKDGEITRDCNLLGRVVHNEMEAFKLYNDYAYSVGFGVRCGKQRLYERTTLIRQKEYVCRNEGQKGSWKLGEEVNRRLTTRCNCLAMIRFSVSKDGSIWKVTKHVKEHNHELAKPEERHLIRSFREAEYLTILAMRWIQMSCSGDVCTYEVKAERDNAKSYLVAFKKENLDVSCSCKFFEAEGILCSHALKILSLHNVTMIPEKYVLLRWTKQPKQVISYSWLSETSSEPYNGNSNEPEIIFRNSRARSSYNMILQCATDARARKEYDVAFEQLVSRLNNVLAGMDLHGDVNEGQVSRERHEKYIKEVSIKNPPKARPKGAPNVRFKSHLEKSKRKLSPSEMLLSLLNVDNAERWNSGYQYSFPASNRSCLCTENKRQSIKEQKE* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01702 634 Pfam FAR1 DNA-binding domain 275 362 IPR004330 -
Rops9g01702 634 SMART 26again6 421 448 IPR006564 GO:0008270
Rops9g01702 634 Pfam SWIM zinc finger 410 443 IPR007527 GO:0008270
Rops9g01702 634 ProSiteProfiles Zinc finger SWIM-type profile. 410 446 IPR007527 GO:0008270
Rops9g01702 634 PANTHER OS01G0519700 PROTEIN 381 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01702 Rops-Chr9 29913441 29924452 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Rops9g01702 FAR1 1.5e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01702 - - pda:103701434 128.642