Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01700 ATGGTCCTTTCTCTCATCGTAATTCAAGCCCAGGAGGACAGTGAAGCAGAGACCATGCCAGAACTGCCCCAACCTGTGCGTCCAAGCACTGTGGTTGTAACAGTGGCCGTCTCAATCATGTTTACCATAACATTTCTCTTACTTATCTATGTGAAGTTGCGTAGAACTAGAAATCTTGAACTTTTGCATAGAACTGCCCATCATACACCAGATTTTCAAGGACTAACTCGGTCAAGGTCAACTTTTTCAGGGATAGATAGACAAGTAATTGAAACACTCCCATATTTCAAGTTTTCTTCCCTTAAGGGATCCAAGCAAGGCCTAGAATGTACTGTTTGCTTGTCACAATTTGAGGATAATGATATTCTTAGACTGTTGCCAAAGTGCAAGCATGCTTTCCACATGAACTGCATTGACAGGTGGCTTGAAAGTCACTCTAGTTGCCCTCTGTGCAGGAACAATATTGACCCTAGAGACATCAAGAACTTCACTTGCTCAGTCAGCTCAAGGTTCCTGCAAGTTCCTTCAAATTTAACAGAGGATACAAATCTTGAAATCTTTGTCCAGAGGGAGCCATCTCATCAAGGGTCATCAAGATTTATTAATATTAAAAGCAGATTTTGGGATGTGGGCAAGAGCAACAAAGAAGGACTGCTCATTGATCAAGAAGTTGATAGTACTAGCAGTGGTACAGTTAGGAAACTTGTGCACAGGTTCAATCACAAAATTGTCATCTCTGGTGTTGTTACAAGAAGCAGGTGGAGTGATCTTAATTCTTCAGACATGCTATCCTTGAACAGTGAGATGCTTAATGACATGTCAAGCAGAAGATTCTCTCCCTTGGAATCAACCAACAGTGAAAGGTTTATTGGAAATTCAAGCCTTCCCAATCCTTATGAGAAGAGATCGATGTCTGAGATTTCTCATGTTCCAAGGTTTGCAGAAATCAGCAAGCAGAATAGAATCAAAGAAGCTATAGCATCTAATGGAAACAATGGGAGGGAAGAAAGATTGAGGATGATTTGGTTGCCAATTGCTCAGCGAACAGTGCAATGGTTTGCTAAAGAAACTCGAGAATTAGAACACACTCGTTTAGTTTCAAATGTTTGA 1110 0.4081 MVLSLIVIQAQEDSEAETMPELPQPVRPSTVVVTVAVSIMFTITFLLLIYVKLRRTRNLELLHRTAHHTPDFQGLTRSRSTFSGIDRQVIETLPYFKFSSLKGSKQGLECTVCLSQFEDNDILRLLPKCKHAFHMNCIDRWLESHSSCPLCRNNIDPRDIKNFTCSVSSRFLQVPSNLTEDTNLEIFVQREPSHQGSSRFINIKSRFWDVGKSNKEGLLIDQEVDSTSSGTVRKLVHRFNHKIVISGVVTRSRWSDLNSSDMLSLNSEMLNDMSSRRFSPLESTNSERFIGNSSLPNPYEKRSMSEISHVPRFAEISKQNRIKEAIASNGNNGREERLRMIWLPIAQRTVQWFAKETRELEHTRLVSNV* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01700 369 SUPERFAMILY RING/U-box 87 157 - -
Rops9g01700 369 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Rops9g01700 369 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 11 356 - -
Rops9g01700 369 CDD RING-H2_EL5-like 109 152 - -
Rops9g01700 369 FunFam RING-H2 finger protein ATL43 85 159 - -
Rops9g01700 369 SMART ring_2 110 151 IPR001841 -
Rops9g01700 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 160 IPR013083 -
Rops9g01700 369 Pfam Ring finger domain 109 152 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01700 Rops-Chr9 29885114 29886223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01700 27 369 C3H Transcription Factor Family AT2G20030 40.934 5.11e-81 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01700 K10664 - gmx:100803881 444.506