Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01687 ATGGAAGCACCCAAGTTTTTCCAATTCTCCTCCGACAACAACCATGGCAATAACGCCGGGGCTGCTGACCACTTCATCGTCGAGGACCTCCTCGACTTTTCCAATGACGATGCAATCATTTCGGATGCCACCTTTGACTCTGTCCCCGGCAACTCCTCCACCGACTCTTCCACCGTAACCGCCATTGATAGCTGCAATTCCTCTTCCTTCTCCGGGTGCGACCCCAATCTCGTTACCGATATTGGTAGCCAGATTCTCTCTGACGGCCATTTCTCCGGTGACCTCTGCGTTCCGTATGATGATCTAGCAGAGCTAGAATGGCTTTCAAATTTCGTGGAGGAATCATTCTCCAGCGAGGACTTGCAGAAGCTGGAGCTGATATCGGGAATGAAGTCACAGAACAAAAAGAATGACCCATCTGAGGTACCAGAATTACAGTGTGAATCCAACCGAAACAGCCCAATATTCAATAGAGAAGTGTCGGTTCCAGCCAAAGCCCGCAGCAAGAGGACCCGCGGGCCTCCATGCAACTGGACATCACGCCTCCTTGTCTTGTCTCCAACGACGTCGTCTTCAGAACCTGATGCTGTCATGCCCACTCCCACAACACCTTCTGTCACAGTTGCAAAGAAGTCAACAAAAGCAGCTCCAAGAAAGAAGGATGGCGGAGATGGAAGCTCCGGCGACGGCCGCAGGTGCTTGCATTGCGCGACGGACAAGACACCACAGTGGCGAACTGGGCCCATGGGCCCAAAGACACTCTGCAACGCTTGTGGTGTAAGGTATAAGTCGGGCCGGTTGGTTCCCGAATACAGGCCCGCAGCGAGCCCAACGTTTGTGCTGACAAAACACTCTAACTCGCACCGTAAGGTGCTGGAGCTGAGAAGGCAGAAGGAGATGGTGCGGGCCCAACAACATCAGCAACAACAACAGTTCTTACCACAACATCATCATCATCATCATAATATGATGTTTGATATGTCCAACGGTGACGATTACTTGATCCACCAACATGTGGGGCCTGATTTTAGACAGTTGATCTAG 1044 0.5163 MEAPKFFQFSSDNNHGNNAGAADHFIVEDLLDFSNDDAIISDATFDSVPGNSSTDSSTVTAIDSCNSSSFSGCDPNLVTDIGSQILSDGHFSGDLCVPYDDLAELEWLSNFVEESFSSEDLQKLELISGMKSQNKKNDPSEVPELQCESNRNSPIFNREVSVPAKARSKRTRGPPCNWTSRLLVLSPTTSSSEPDAVMPTPTTPSVTVAKKSTKAAPRKKDGGDGSSGDGRRCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMVRAQQHQQQQQFLPQHHHHHHNMMFDMSNGDDYLIHQHVGPDFRQLI* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01687 347 PIRSF Txn_fac_GATA_plant 7 323 IPR016679 GO:0003677|GO:0005634|GO:0045893
Rops9g01687 347 SMART GATA_3 227 277 IPR000679 GO:0006355|GO:0043565
Rops9g01687 347 Gene3D - 224 311 IPR013088 GO:0006355|GO:0008270
Rops9g01687 347 ProSiteProfiles GATA-type zinc finger domain profile. 227 263 IPR000679 GO:0006355|GO:0043565
Rops9g01687 347 ProSitePatterns GATA-type zinc finger domain. 233 258 IPR000679 GO:0006355|GO:0043565
Rops9g01687 347 CDD ZnF_GATA 232 279 IPR000679 GO:0006355|GO:0043565
Rops9g01687 347 FunFam GATA transcription factor 224 311 - -
Rops9g01687 347 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 229 291 - -
Rops9g01687 347 MobiDBLite consensus disorder prediction 187 232 - -
Rops9g01687 347 MobiDBLite consensus disorder prediction 187 210 - -
Rops9g01687 347 PANTHER GATA TRANSCRIPTION FACTOR 13 309 - -
Rops9g01687 347 MobiDBLite consensus disorder prediction 132 154 - -
Rops9g01687 347 MobiDBLite consensus disorder prediction 214 232 - -
Rops9g01687 347 Pfam GATA zinc finger 233 266 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01687 Rops-Chr9 29550773 29552505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01687 25 347 C2C2-Gata Transcription Factor Family AT5G25830 54.386 4.44e-98 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Rops9g01687 GATA 3.2e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01687 - - zju:107420464 477.633