Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01659 ATGTCTCACAATCACATCACCACCGATTCCCCTCTCTCTCGTCGCATAGTTCGTGCCTTCCTTCACTTCCTTAACCATGTTGAACCGGGTCCTGGGGTTGATGCTGAAGGGATTGAGGTTGCTCGGGAGTGTTTGGCAGAGGCCTTTAAGATTAAATCATCTGGCGAATTTGCGAAATCTGATTCATTGATTGACATATTCAAGTCCCTTGAAGCAAACAAGCAATGTGAAACTAGTAAGTCAGATGTTGGCACTCAACTAGATTCTGTGGAAGCTTCCAGTTCATTCTCTGCCCAGGATCCTGCTCATGCTAAAAACCATTCCGAGGCATTGAAATCTATGGACGAAGATTGGACACAGGGCCCTGACACTTTTGCAACATCTAAAGATGAACTCTGTGGACAATTCTTTGCTGCTCTGGAGAAAAATCACTATTTTAGGACCAATATTGATGGGAGTGATGACCCCGTGCAACTGGAGAAAGCATCTCGTTTGTTCAATGATGCTTTTAAGGAGATGGAAAGAGCTGGGTGTCGGCAGTTCGGTCTGAAGAATTTGGCTGAATCACTGAAATCACTAGGTAACAAGGCAATGCAAATCAAGCATTACTCTGATGCAATTCAGTTGTATAATTGTGCAATTGCGCTATATAACAAGAGTGCTGTATACTACTGCAACAGGGCAGCTGCTTACACTCAGATTGACAAATATACAGAAGCAATCCAAGATTGTCTTAGATCTATTGAGATTGATCCAAACTACAGCAAGGCATACAGTCGTCTGGGTTTAGCTTATTATGCACAAGGAAACTACAGAGATGCTATTGACAAAGGGTTTGAAAAAGCCTTGCAGTTGGATCCAAATAACGAGTCTGTTAAAGAAAATATACGGGTAGCTGAGCATAAATTGATGGAAGAGCAACATCATGCAGATCACAATCAGAATTCAAGATCATCTCAAGAATTCCAAAACCAATCTGCACGAGGATCAACAAGCCATGCAGTGCCACCTTCATTTACCTCAATGTCATTTAATCCCAATGATCTTGCAAGCATGTTCATGAACATAGCGGCGAATGCTACAAATGCATATCAGGGGTCAAATCCTCAGGAAAGACAAGAAGATACCAATGCTGGTGGAGCTAATGAACCTGAAATAAGAATTGGGGGCAATGTCAATGTAAACTTTGATCAAATGCCTCAGGATCTAACAGGGGCCATTCAATCTGTGATGGAAATGTTTTCTGGGAATCTACCTCATGGGCAACATGAAGATCAAATGAATAATGGAAGAACAGCACCAAACTGA 1308 0.4205 MSHNHITTDSPLSRRIVRAFLHFLNHVEPGPGVDAEGIEVARECLAEAFKIKSSGEFAKSDSLIDIFKSLEANKQCETSKSDVGTQLDSVEASSSFSAQDPAHAKNHSEALKSMDEDWTQGPDTFATSKDELCGQFFAALEKNHYFRTNIDGSDDPVQLEKASRLFNDAFKEMERAGCRQFGLKNLAESLKSLGNKAMQIKHYSDAIQLYNCAIALYNKSAVYYCNRAAAYTQIDKYTEAIQDCLRSIEIDPNYSKAYSRLGLAYYAQGNYRDAIDKGFEKALQLDPNNESVKENIRVAEHKLMEEQHHADHNQNSRSSQEFQNQSARGSTSHAVPPSFTSMSFNPNDLASMFMNIAANATNAYQGSNPQERQEDTNAGGANEPEIRIGGNVNVNFDQMPQDLTGAIQSVMEMFSGNLPHGQHEDQMNNGRTAPN* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01659 435 Gene3D Tetratricopeptide repeat domain 183 336 IPR011990 GO:0005515
Rops9g01659 435 MobiDBLite consensus disorder prediction 316 340 - -
Rops9g01659 435 MobiDBLite consensus disorder prediction 307 340 - -
Rops9g01659 435 MobiDBLite consensus disorder prediction 416 435 - -
Rops9g01659 435 Pfam Tetratricopeptide repeat 256 289 IPR013105 -
Rops9g01659 435 PANTHER LD24721P 3 419 IPR047150 -
Rops9g01659 435 MobiDBLite consensus disorder prediction 365 384 - -
Rops9g01659 435 Pfam Tetratricopeptide repeat 221 254 IPR001440 GO:0005515
Rops9g01659 435 MobiDBLite consensus disorder prediction 421 435 - -
Rops9g01659 435 SUPERFAMILY TPR-like 186 300 IPR011990 GO:0005515
Rops9g01659 435 Gene3D Immunoglobulin FC, subunit C 2 73 - -
Rops9g01659 435 ProSiteProfiles TPR repeat profile. 255 289 IPR019734 GO:0005515
Rops9g01659 435 ProSiteProfiles TPR repeat profile. 221 254 IPR019734 GO:0005515
Rops9g01659 435 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 182 332 - -
Rops9g01659 435 SMART tpr_5 187 220 IPR019734 GO:0005515
Rops9g01659 435 SMART tpr_5 255 289 IPR019734 GO:0005515
Rops9g01659 435 SMART tpr_5 221 254 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01659 Rops-Chr9 29092172 29103273 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01659 186 285 U-box Gene Family AT3G07370 32.000 3.04e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01659 K16365 - gmx:100799770 658.677