Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01628 ATGGTGGGAGCTACTTCAGCTGATAAAGCCCTACCTGGTTGCAGAGACACATGTGGAGATGTTTCAATTCCTTATCCATTTGGCGTAGGCAAGTCTTCTAAAACAGGTGAGAACTGTTTCTTGGAGGAAGGCTTGGACCTTACATGCCAGAATAACACCTTATATCAAGGCAATACTCAAGTTTTGAACATAACCCTTGAAGGCCAATATGAGATATTGTTTTATGTCTCAAAACTTTGCAACAAAAGCGTAGATGCAAAAGCTAATCAACCCTCTCTTAGCACTCCTGCTTTTACCATTTCTAGCAAAGACAACCAGTTCATAAGTGTTGGCTGCGACACTTATGGCTATCTCAATAGCTATCGCGATGAGGAAGAGTATTCCACAGGGTGCCTAACAAGATGTAACAATAGCAAGTTACCATATTCGGTAACCGATGGACACTGTTCAGGGATAGGGTGTTGCCAAGTTGATATTCCTTCTAAAATAAAGAATATCACTATACAAACTTACAGCTTTAACACTCTGAACTTCAGTGGTTGTAGCTATTCTTTTGTTGCCAAACGTGGCTTCTATAACTTTTCTAACAGTCACTTAGAGAATCTGCCCTTCCACACGCTCCCTATGATTGTTGACTGGACTGTTGGAGACGAGTCATGTGAATTTTTCCAGAAAGGGCTCAGAAAAAGTGCCTGCACAAATAATAGCTATTGTGACAACAGTGACACTGGTTACGTATACCGGTGCAGATGTAAAACTGGTTATGAAGGAAACCCGTACCATCCGAATGGTTGCCAAGACATTGACGAATGTAAGACAAAAAATCATACATGCGAGACTGATCTTCATTGTCGCAACACTGACGGGCATTACGAATGCTTTTGTCCACATGGGCAAGTTGGAAATGGGACACGCTTAGAAAGATGCCAACCAATCTCGCAAGGAAGTATTCGAACCAAGTTTGCTATTGGTGCATGTGCTGGATTTATAGCTCTGTTGGGGGCTTCCTGGTTATACTTCATATATCAAAGAAGGGAACTAATCAAACAAAGAGAAAAATTCTTTGAGCAGAATGGTGGTTTCATTTTGCAACAACAACTCTTGGCTAGAAGAGACTCCCCTCAAACTGCACAAATTTTCACAGCAGAAGAGTTGAAGAAGGCCACCAACAACTATAGTGAGAGCTCAGTCATTGGCAAAGGAGGTTTTGGGACTGTTTTCAAAGGATTCTTTGCGGATAACAGGGTTGTGGCTGTCAAGAAGTCCAAAGTAGTGGATCAAAGCCAAGCTGAGCAATTCATTAACGAGGTGATTGTTCTGTCCCAAATCAATCACAGGAATGTGGTAAAACTCTTGGGTTGTTGTTTGGACACTGAAGTCCCATTATTGGTTTATGAATTTGTTAACAATGGTACCCTTTTTGATCATTTACATGATGAGAGCAAGGTAGGGAAATTACCTTGGAAGACCCGTCTAAGAATAGCCATAGAGGCAGCCGGAGCACTGTCATATTTGCACTCAGATGCATCCACAACCATTATCCACAGAGATGTCAAGAGTGCCAACATTCTCTTGGATGATTCTTTCACTGCCAAAGTTTCTGATTTTGGAGCTTCAAGATTGGTTCCACTTGATCAAGCTGAAATAGCCACAATGGTACAAGGAACTTTTGGGTACTTGGACCCAGAGTACATGCAAACAAGCAAACTCACTGAGAAGAGTGATGTCTATAGCTTTGGTGTAGTGCTTTTAGAACTTCTAACAGGGCAGAAAGCGCTTTCAACTCAGAGGCCAGAAGGTGAAAGAAGTCTTGCCTTGCGCTTTCTCTCTTGCTTGGGAGATGATCGCTTGTTTGAGATTCTTGATTTCGGTCTTTTGAATGAAGAAAATAAGGTGGAGATCAAGGAAGTTGCTATTCTTGCAAGCAAGTGCTTGAGTCTTAAAGGGGAGGAGAGGCCTAGCATGAAGGAAGTGGAAATGGAGCTGAAGGGAATAAGGAAAACAGAGAAGCACCCATGGACCAAAACAGACCTGAATTTGGAGGAGTCTCAATACTTTGTTCATGAGGTATCTGGCATTTATAAGCCTGCCGAAAGTAGCAGCCGTGGAAATACTGAGTATGACAGCTTGAGGGACCATGCACAGATTGCCTTCGAAATTGCACGTTGA 2169 0.4232 MVGATSADKALPGCRDTCGDVSIPYPFGVGKSSKTGENCFLEEGLDLTCQNNTLYQGNTQVLNITLEGQYEILFYVSKLCNKSVDAKANQPSLSTPAFTISSKDNQFISVGCDTYGYLNSYRDEEEYSTGCLTRCNNSKLPYSVTDGHCSGIGCCQVDIPSKIKNITIQTYSFNTLNFSGCSYSFVAKRGFYNFSNSHLENLPFHTLPMIVDWTVGDESCEFFQKGLRKSACTNNSYCDNSDTGYVYRCRCKTGYEGNPYHPNGCQDIDECKTKNHTCETDLHCRNTDGHYECFCPHGQVGNGTRLERCQPISQGSIRTKFAIGACAGFIALLGASWLYFIYQRRELIKQREKFFEQNGGFILQQQLLARRDSPQTAQIFTAEELKKATNNYSESSVIGKGGFGTVFKGFFADNRVVAVKKSKVVDQSQAEQFINEVIVLSQINHRNVVKLLGCCLDTEVPLLVYEFVNNGTLFDHLHDESKVGKLPWKTRLRIAIEAAGALSYLHSDASTTIIHRDVKSANILLDDSFTAKVSDFGASRLVPLDQAEIATMVQGTFGYLDPEYMQTSKLTEKSDVYSFGVVLLELLTGQKALSTQRPEGERSLALRFLSCLGDDRLFEILDFGLLNEENKVEIKEVAILASKCLSLKGEERPSMKEVEMELKGIRKTEKHPWTKTDLNLEESQYFVHEVSGIYKPAESSSRGNTEYDSLRDHAQIAFEIAR* 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01628 722 SMART egfca_6 267 310 IPR001881 GO:0005509
Rops9g01628 722 Pfam Wall-associated receptor kinase galacturonan-binding 14 69 IPR025287 GO:0030247
Rops9g01628 722 SMART serkin_6 392 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g01628 722 Pfam Protein kinase domain 392 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g01628 722 FunFam Wall-associated receptor kinase 2 468 685 - -
Rops9g01628 722 SUPERFAMILY EGF/Laminin 266 304 - -
Rops9g01628 722 SUPERFAMILY Protein kinase-like (PK-like) 374 660 IPR011009 -
Rops9g01628 722 Gene3D Laminin 271 309 - -
Rops9g01628 722 ProSitePatterns Protein kinases ATP-binding region signature. 398 421 IPR017441 GO:0005524
Rops9g01628 722 Gene3D Phosphorylase Kinase; domain 1 365 467 - -
Rops9g01628 722 Pfam Calcium-binding EGF domain 267 309 IPR001881 GO:0005509
Rops9g01628 722 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 284 295 IPR000152 -
Rops9g01628 722 Gene3D Laminin 219 270 - -
Rops9g01628 722 Gene3D Transferase(Phosphotransferase) domain 1 468 688 - -
Rops9g01628 722 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 5 669 IPR045274 GO:0007166
Rops9g01628 722 FunFam Wall-associated receptor kinase 2 362 467 - -
Rops9g01628 722 ProSiteProfiles Protein kinase domain profile. 392 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g01628 722 ProSiteProfiles EGF-like domain profile. 267 310 IPR000742 -
Rops9g01628 722 ProSitePatterns Serine/Threonine protein kinases active-site signature. 513 525 IPR008271 GO:0004672|GO:0006468
Rops9g01628 722 CDD EGF_CA 267 301 - -
Rops9g01628 722 CDD STKc_IRAK 398 665 - -
Rops9g01628 722 ProSitePatterns Calcium-binding EGF-like domain signature. 267 293 IPR018097 GO:0005509
Rops9g01628 722 FunFam Fibrillin 2 262 307 - -
Rops9g01628 722 SMART egf_5 270 310 IPR000742 -
Rops9g01628 722 SMART egf_5 219 266 IPR000742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01628 Rops-Chr9 28497274 28501208 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01628 5 722 Receptor kinase-like Gene Family AT1G21230 44.251 0.0 569
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Rops9g01628 Pkinase 3.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01628 - - gmx:100819535 919.072