Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01621 ATGTCGAAGTCTCCCTCTCCTGAACAACGGCGGTCCATTTATTCTTCTTCTCAGCCTATGGAATTCAATGAGGCAACAGGAATGGACGATCCAGAATCTACAATGGCAACAGTTGCTAATTTTGTGGAGCAACTGCATGCCAACTTGTCATCACCACTTGAGAAAGAACTTATTACATCACGCTTGCTAGGTATTGCCAGAAAAAGAAAAGATGCTAGAGCACTTATTGGTTCTCATGCCCAAGCCATGCCATTGTTCATAAACATTCTCAGAAATGGAACCCCTACTGCAAAAGTTAATGTTGCTTCCACTCTCAGTGTCCTGTGCAAAGATGATGACTTGAGGTTAAAAGTACTTCTTGGTGGTTGTATCCCACCATTACTGTCGCTTTTAAAATATGAATCCACTGAAGCCAGGAAGGCAGCAGCTGAAGCAATATATGAAGTTTCCTCTGATGGTCTTTCAAATGATCATGTTGGTATGAAAATTTTTATTACAGAAGGTGTAGTCCCAACCTTATGGAAACAGCTAAATCCCAAGAACAAAGAAGACAAAGTTGTGGAGGGTTTTATTACTGGAGCATTAAGAAATCTGTGTGGGGACAAAGATGGCTATTGGAAAGCAACATTAGAAGCTGGAGGTGTGGATATTATTGTGGGTCTATTGTCTTCAGATAATGCTGTTTCTCAGTCAAATGCAGCTTCTCTATTGGCACGTTTAATGCTGGCTTTCAGTGATAGCATCCCCAAAGTAATAGACTCTGGAGCAGTCCAAGCTTTACTTCAACTTGTTGGTCTGGAAAATGATATTTCTGTACGAGCTAGTGCTGCTGATGCCCTAGAGGCCCTTTCTTCAAAGTCTACCAAGGCTAAAAAGGCTATTGTCAGTGCAGATGGTGTTCCAATCCTTATTGGAGCTATAGTTGCTCCTTCTAAAGAGTGCATGCAAGGTGATCGTGGCCAGGCTCTGCAGGAGCACGCAACTCGAGCTTTAGCCAACATCTATGGTGGCATGTCTGCTTTAATACTATATCTTGGAGAACTTTCCCATTCTCCTCGCCTTGCTGCACCGATTGGTGATATAATTGGTGCTCTTGCTTATACACTCATGGTCTTTGAGGAAAAACTTGATGTTAATGAGGAACATTTTGATGCAACTAAGATAGAGGATATTCTAGTAACTCTTTTAAAGCCTCGAGACAACAAGCTAATTCAAGAGCGTGTCCTTGAGGCAATGGCTAGCCTTTATGGAAACGCCTATCTCTCAAAGTGGCTTATTCAGGCAGACTCAAAGAAGGTTCTCATTGGACTTATAACTATGGCTGCCCCTGATGTGCAAGAGTATCTGATACTTTCATTGACAAGCTTATGTTGTGATAGGATTGGAATATGGGAGGCCATAAAAAAAAGAGAAGGTATCCAATTACTCATATCATTGGTGGGATTATCCAGTGAGCAGCATCAAGAGTACTCAGTTCAATTGCTAGCAATCTTAACTGATCAGGTTGATGACAGCAAGTGGGCAATCACTGCTGCTGGAGGGATTCCACCATTGGTGCAGTTGTTGGAGACAGGATCACAGAAAGCAAGAGAGGAAGCAGCTAATGTTCTGTGGAGTTTGTGCTGTCACAGTGAAGATATTCGTGCTTGTGTTGAAAGTGCTGGAGCCATCCCGGCATTTTTGTGGCTTCTTAGGAGTGGTGGACCAAAAGGACAAGAAGCTTCTGCTATGGCACTTACAAAGCTTGTCCGAGTAGCTGATTCTGCCACAATTAATCAGCTATTAGCATTGCTCCTAGGGGATTCTCCAAGCTCCAAGGCCCATATAATTCGAGTTTTAGGTCATGTACTTTCTATGGCTTCACAGAAGGATCTCCTTCAGAAGGGTTCTGCGGCTAATAAAGGCCTGAGATCTCTTGTTCAGGTTCTCAATTCATCAAATGAGGAAACCCAAGAATATGCAGCTTCAGTCCTAGCTGATTTATTTATCAAAAGACAAGACATTTGTGATAGTCTTGCAACTGATGAGATTGTTCTTCCTTGCATGAAGCTTTTGACCAGCAAAACTCAAGTTGTTGCCACTCAGTCAGCTCGAGCATTAAGTGCTCTGTCCCGTCCAACAAAAAGCAAAGCTGCAAATAAGATGTCTTATATTGTAGAGGGTGACGTTGAGCCACTAATCAAGTTAGCTAAAACATCCTCTGTTGATGCTGCTGAAACTGCTGTGGCTGCATTGGCCAATCTTCTCTTTGATCCTTTTATTGCGGCTGAGGCTTTAGCTGAAGATGTTGTTTCAGCTTTAACAAGAGTTCTGGCAGAAGGAACCTTGGAAGGTAAACAAAATGCATCTCGTGCACTTCATCAATTATTGAAGCATTTTCCAATGAGTGACGTTTTCAAGGGTAATGCTCAATGCCGCTTCACTGTGCTTGCACTTGTTGATTCATTAAGAGCTATGGATATGGATGGAAGTGATGCTGCAGATGCTTTAGAAGTAATTGCACTGCTAGCCAGGACTAAACAGGGTGTCAACTTCACTTACCCTCCACGCTCAGCTCTGGGTGAAATACCATCATGCTTAGAACTTCTTGTCTGCTGCCTGGCTGAGGGGCCTTCCCTTGTGCAAGATAAGGCAATTGAAATTCTGTCTAGACTTTGTGGAGATCAGCCAGCTGTTCTTGGTGATTTGTTATTTGCCAGTTCCAGATCCATTGGTTCATTGGCTAATAGAATAATAAACTCCTCCAGTCTAGAAGTAAAAGTTGGAGGAGTTGCCTTACTAACTTGTGCTGCAAGGGAGAAGAAAGAACTTTCAATGGATTCGCTCGACACTTCTGGGTATCTGAAACCTTTAATATATTCTTTAGTTGATATGGTGAAGCAGAGTTGTAGCTGTTCTTCATTAGATACTGATGTTCTCACTCCTAGAGGTTTCATGGAGAGAAATGCATTTCAAGAAGTTGATGAGTTTGATATTCCTGATCCGGCCACAGTCTTGGGAGGTACTGTTGCCCTATGGTTGCTCTCAATTATTGCTTCTTTTCATATGAAGAGCAAGCTCACAATTATGGAAGCTGGTGGACTTGAAGCTCTCTCTGACAAACTTGTGAGACATACTTCAAATCCACAGGCAGAATATGAGGATACAGAAGGAATATGGATTAGTGCCTTGCTCTTGGCCATTTTATTTCAAGATGCAAATGTCATTTTATTGCCTGCAACAATGCGCATTATACCTTCTATCGCTCTTCTGCTAAGATCGGATGAAGTAATTGATAAATATTTTGCTGCCCAGGCTATGGCTAGTCTTGTTTGTAATGATGTAAGATTGGGATCTACTGCACGGAAATCTATACCCCTCTTAGTGGATCTCTTGAGACCAATACCAGAAAGACCTAGTGCTCCACCAGTTGCTGTTAAACTCTTGATATCCATTGCAGATGGCAGTGATGCAAATAAATTACTCCTGGCTGAAGCTGGAGCTCTGGAAGCTTTGAACAAATACCTGTCCTTGAGCCCTCAAGACTCAACTGAGACAGCTATTTCCGAGTTATTGAGAATATTATTTTGCAATTCTGACCTGATTAAACATGAAGCATCAACAAGTTCATTGAACCAACTCATAGCTGTTTTGCGTCTTGGATCAAGAAATGCTAGATATAGTGCAGCAAGAGCACTTAATGAACTTTTTGATGCTGACAACATTAGAGACTCAGAATTAGCTAAACAGGCCATTCAACCATTGGTTGACATGCTTAACACGACATCAGGGAGTGAGCAGGAGGCTGCTCTCATGGCCTTGATTAAGTTAACTTCTGGAAATTCTTCGAAAGCATGTCTTTTTACTGATGTAGAAGGGAACCCACTTGAAAGTTTATACAAAGTATTGTCTTCTGCTTCATCCTTAGAATTGAAGAGCCATGCTGCACGACTCTGTTTTGCTCTTTTCGGTAATAGCAAGATCAGAGCAAATCCAGTTGCCTCAGAATGCCTGGAACCCCTTATATCACTGATGCAGTCTGGTTCTGGGACAGCAATAGAATATGGGGTTTGTGCCTTTGAGAGACTGTTGGAAGATGAACAACAAGTAGAGCTTGCAGCAGCCTATAATGTTGTGGATCTCCTTGTCAGCTTGGTTTCTGGTAAAAACTATCAGCTTATTGAGGCTGCCATATCTGCTCTTATCAAATTGGGAAAAGATAGGACTCCAAGCAAAGAAGACATGGTTAAAGCTGGCATTATCGATAATTGTCTCCAGCTACTCCAATCAGCACCTAGCTCATTATGCTCCACAATAGCTGAGCTGTTTCGCATTTTAACTAATAGTAATGCAATTGCTAGAAGTTCAGATGCTGCAGAAATAGTAGAACCCCTTTTCCATGTTTTGCTCCGTCGAGATTTTAACTTATGGGGACAGCATAGTGCCTTACAAGCACTTGTAAATATATTGGAGAAACCACAAAGTCTTGCAACCTTAAAGCTTACTCCTAGCCAAGTCATTGAACCCTTGATTTCCTTTCTGGAATCCCCGTCCCAAGCTATTCAGCAGCTTGGCACAGAACTGTTATCTCATCTTCTTGCACAGGAACATTTTCAGCAAGATATTACTACAAAGAATGCAGTTGTGCCCCTCGTACAGCTTGCTGGAATTGGAATATTGAACTTACAGCAAACAGCAATAAAAGCATTGGAAAAAATTTCCAAAAGCTGGCCAAAAGCCGTTGCTGATGCAGGAGGTATTTTTGAGCTTGCAAAAGTTATTATTCAAGATGACCCTCAGCCACCGCATGCACTCTGGGAATCAGCTGCTTTAGTTCTCTCTAATGTATTACGTTCCAATGCTGATTACTATTTTAAAGTTCCTGTGGTGGTCCTTGTAAAACTCTTGCACTCAAAACTTGAGAGTACAATTAGCATAGCTCTTAATGCTTTAATAGTTCATGAAAGAAGCGATGCTTCGAGTGCTGAACAGATGATGGAAGCTGGAGCTATAGATGCTCTGTTGGACCATTTAAGATCTCATCATTGTGAAGAAGCATCTGGTAGATTACTCGAAGCTTTATTTAACAACGTAAGAGTACGAGAGATGAAGGTATCTAAGTATGCTATCGCACCTTTATCCCAGTATCTGTTAGATCCACAAACCAGATCACAGTCTGGCAAGCTTCTTGCTGCTTTAGCTCTAGGAAATATTTCTCAGCATGAAGGACATGCTAGAGCTAGTGACTCCGTATCTGCATGTTGTGCATTGATAAGTTTACTTGAAGATCAGCCAACTGAAGAAATGACGATGGTGGCTATATGTGCATTGCAAAACTTTGTTATGAACAGCAGAACCAATAGGCGAGCTGTTGCAGAAGCTGGGGGCATACTGGTGATTCAGGAACTGCTACTGTCTCCAAATACAGAAGTTGCTGGACAAGCAGCATCACTGATCAAATTTTTGTTTTCTACCCACACACTGCAAGAATATGTGTCAAATGAACTGATCAGATCTTTGACAGCTGCACTGGAACGAGAGTTGTGGTCAACTGCCACAATCAACGAGGAGGTTTTGAAAACTCTGCATGTGATATTCATGAACTTCCCTAAGCTTCACATATCTGAAGCAGCAACCCTTTGCATTCCTCATTTGGTAGGGGCACTTAAATCTGGAGGTGAAGTGGCTCAAGACTCTGTACTTGACACCTTTTGCTTGCTAAAACAATCTTGGTCAACCATGCCAATAGATATAGCAAATTCTCAAGCTATGATTGCTGCTGAAGCCATCCCCATCTTGCAAATGCTCATGAAAACCTGCCCACCAAGTTTCCATGAGAGGGCGGATACTCTTCTGCACTGCTTACCAGGTTGTTTGACTGTCACCATTAAGCGTGGAAACAACCTCAAACAAACCATGGGAAGCACTAATGCATTCTGCAGATTGACCATAGGCAATGGTCCTCCCAAACAAACCAAGGTAGTGAATCATAGTACTTCTCCAGAATGGAAAGAAGGATTCACATGGGCATTTGATGTACCTCCAAAGGGCCAAAAGCTTCATATCATATGCAAAAGCAAGAATGCTTTTGGGAAGACAACTCTTGGAAGAGTCACTATCCAAATTGATAAAGTTGTGACAGAAGGGGTTTATAGTGGATTATTCAGTCTTAATCATGATGGCAACAAAGATGGTTCTTCCCGAACACTTGAAATTGAGATTATATGGTCCAACGGGATTTCTAATGATGACATTTGA 6237 0.4191 MSKSPSPEQRRSIYSSSQPMEFNEATGMDDPESTMATVANFVEQLHANLSSPLEKELITSRLLGIARKRKDARALIGSHAQAMPLFINILRNGTPTAKVNVASTLSVLCKDDDLRLKVLLGGCIPPLLSLLKYESTEARKAAAEAIYEVSSDGLSNDHVGMKIFITEGVVPTLWKQLNPKNKEDKVVEGFITGALRNLCGDKDGYWKATLEAGGVDIIVGLLSSDNAVSQSNAASLLARLMLAFSDSIPKVIDSGAVQALLQLVGLENDISVRASAADALEALSSKSTKAKKAIVSADGVPILIGAIVAPSKECMQGDRGQALQEHATRALANIYGGMSALILYLGELSHSPRLAAPIGDIIGALAYTLMVFEEKLDVNEEHFDATKIEDILVTLLKPRDNKLIQERVLEAMASLYGNAYLSKWLIQADSKKVLIGLITMAAPDVQEYLILSLTSLCCDRIGIWEAIKKREGIQLLISLVGLSSEQHQEYSVQLLAILTDQVDDSKWAITAAGGIPPLVQLLETGSQKAREEAANVLWSLCCHSEDIRACVESAGAIPAFLWLLRSGGPKGQEASAMALTKLVRVADSATINQLLALLLGDSPSSKAHIIRVLGHVLSMASQKDLLQKGSAANKGLRSLVQVLNSSNEETQEYAASVLADLFIKRQDICDSLATDEIVLPCMKLLTSKTQVVATQSARALSALSRPTKSKAANKMSYIVEGDVEPLIKLAKTSSVDAAETAVAALANLLFDPFIAAEALAEDVVSALTRVLAEGTLEGKQNASRALHQLLKHFPMSDVFKGNAQCRFTVLALVDSLRAMDMDGSDAADALEVIALLARTKQGVNFTYPPRSALGEIPSCLELLVCCLAEGPSLVQDKAIEILSRLCGDQPAVLGDLLFASSRSIGSLANRIINSSSLEVKVGGVALLTCAAREKKELSMDSLDTSGYLKPLIYSLVDMVKQSCSCSSLDTDVLTPRGFMERNAFQEVDEFDIPDPATVLGGTVALWLLSIIASFHMKSKLTIMEAGGLEALSDKLVRHTSNPQAEYEDTEGIWISALLLAILFQDANVILLPATMRIIPSIALLLRSDEVIDKYFAAQAMASLVCNDVRLGSTARKSIPLLVDLLRPIPERPSAPPVAVKLLISIADGSDANKLLLAEAGALEALNKYLSLSPQDSTETAISELLRILFCNSDLIKHEASTSSLNQLIAVLRLGSRNARYSAARALNELFDADNIRDSELAKQAIQPLVDMLNTTSGSEQEAALMALIKLTSGNSSKACLFTDVEGNPLESLYKVLSSASSLELKSHAARLCFALFGNSKIRANPVASECLEPLISLMQSGSGTAIEYGVCAFERLLEDEQQVELAAAYNVVDLLVSLVSGKNYQLIEAAISALIKLGKDRTPSKEDMVKAGIIDNCLQLLQSAPSSLCSTIAELFRILTNSNAIARSSDAAEIVEPLFHVLLRRDFNLWGQHSALQALVNILEKPQSLATLKLTPSQVIEPLISFLESPSQAIQQLGTELLSHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAIKALEKISKSWPKAVADAGGIFELAKVIIQDDPQPPHALWESAALVLSNVLRSNADYYFKVPVVVLVKLLHSKLESTISIALNALIVHERSDASSAEQMMEAGAIDALLDHLRSHHCEEASGRLLEALFNNVRVREMKVSKYAIAPLSQYLLDPQTRSQSGKLLAALALGNISQHEGHARASDSVSACCALISLLEDQPTEEMTMVAICALQNFVMNSRTNRRAVAEAGGILVIQELLLSPNTEVAGQAASLIKFLFSTHTLQEYVSNELIRSLTAALERELWSTATINEEVLKTLHVIFMNFPKLHISEAATLCIPHLVGALKSGGEVAQDSVLDTFCLLKQSWSTMPIDIANSQAMIAAEAIPILQMLMKTCPPSFHERADTLLHCLPGCLTVTIKRGNNLKQTMGSTNAFCRLTIGNGPPKQTKVVNHSTSPEWKEGFTWAFDVPPKGQKLHIICKSKNAFGKTTLGRVTIQIDKVVTEGVYSGLFSLNHDGNKDGSSRTLEIEIIWSNGISNDDI* 2079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01621 2078 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 255 299 IPR000225 GO:0005515
Rops9g01621 2078 SMART arm_5 1318 1358 IPR000225 GO:0005515
Rops9g01621 2078 SMART arm_5 244 285 IPR000225 GO:0005515
Rops9g01621 2078 SMART arm_5 665 705 IPR000225 GO:0005515
Rops9g01621 2078 SMART arm_5 111 151 IPR000225 GO:0005515
Rops9g01621 2078 SMART arm_5 544 584 IPR000225 GO:0005515
Rops9g01621 2078 SMART arm_5 1231 1272 IPR000225 GO:0005515
Rops9g01621 2078 SMART arm_5 287 336 IPR000225 GO:0005515
Rops9g01621 2078 SMART arm_5 156 200 IPR000225 GO:0005515
Rops9g01621 2078 SMART arm_5 623 663 IPR000225 GO:0005515
Rops9g01621 2078 SMART arm_5 1149 1189 IPR000225 GO:0005515
Rops9g01621 2078 SMART arm_5 458 500 IPR000225 GO:0005515
Rops9g01621 2078 SMART arm_5 1359 1399 IPR000225 GO:0005515
Rops9g01621 2078 SMART arm_5 710 750 IPR000225 GO:0005515
Rops9g01621 2078 SMART arm_5 1777 1817 IPR000225 GO:0005515
Rops9g01621 2078 SMART arm_5 1486 1527 IPR000225 GO:0005515
Rops9g01621 2078 SMART arm_5 502 542 IPR000225 GO:0005515
Rops9g01621 2078 SMART arm_5 1690 1733 IPR000225 GO:0005515
Rops9g01621 2078 SMART arm_5 751 791 IPR000225 GO:0005515
Rops9g01621 2078 SMART arm_5 201 242 IPR000225 GO:0005515
Rops9g01621 2078 SMART arm_5 69 110 IPR000225 GO:0005515
Rops9g01621 2078 SMART arm_5 1401 1441 IPR000225 GO:0005515
Rops9g01621 2078 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1949 2055 IPR035892 -
Rops9g01621 2078 SUPERFAMILY ARM repeat 72 309 IPR016024 -
Rops9g01621 2078 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 1106 2071 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Rops9g01621 2078 Gene3D - 367 630 IPR011989 -
Rops9g01621 2078 MobiDBLite consensus disorder prediction 1 23 - -
Rops9g01621 2078 SMART C2_3c 1951 2047 IPR000008 -
Rops9g01621 2078 SUPERFAMILY ARM repeat 470 890 IPR016024 -
Rops9g01621 2078 Pfam Armadillo/beta-catenin-like repeat 506 541 IPR000225 GO:0005515
Rops9g01621 2078 ProSiteProfiles C2 domain profile. 1931 2048 IPR000008 -
Rops9g01621 2078 Gene3D - 157 365 IPR011989 -
Rops9g01621 2078 CDD C2 1952 2042 - -
Rops9g01621 2078 Gene3D - 1360 1528 IPR011989 -
Rops9g01621 2078 Gene3D - 991 1176 IPR011989 -
Rops9g01621 2078 Gene3D - 1177 1359 IPR011989 -
Rops9g01621 2078 Gene3D - 1529 1740 IPR011989 -
Rops9g01621 2078 Pfam C2 domain 1951 2050 IPR000008 -
Rops9g01621 2078 SUPERFAMILY ARM repeat 1048 1234 IPR016024 -
Rops9g01621 2078 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 513 555 IPR000225 GO:0005515
Rops9g01621 2078 Gene3D C2 domain 1950 2075 IPR035892 -
Rops9g01621 2078 Gene3D - 1741 1948 IPR011989 -
Rops9g01621 2078 SUPERFAMILY ARM repeat 1174 1567 IPR016024 -
Rops9g01621 2078 Gene3D - 631 837 IPR011989 -
Rops9g01621 2078 SUPERFAMILY ARM repeat 1500 1945 IPR016024 -
Rops9g01621 2078 Gene3D - 37 156 IPR011989 -
Rops9g01621 2078 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01621 Rops-Chr9 28332589 28343271 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01621 473 700 U-box Gene Family AT2G23140 29.362 1.22e-09 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01621 - - aprc:113846793 3523.79