Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01618 ATGTCGAAGTCTCCCTCTCCTGAACAACGGCGGTCCATTTATTCTTCTTCTCAGCCTATGGAATTCAATGAGGCAACAGGAATGGACGATCCAGAATCTACAATGGCAACAGTTGCTAATTTTGTGGAGCAACTGCATGCCAACTTGTCATCACCACTTGAGAAAGAACTTATTACATCACGCTTGCTAGGTATTGCCAGAAAAAGAAAAGATGCTAGAGCACTTATTGGTTCTCATGCCCAAGCCATGCCATTGTTCATAAACATTCTCAGAAATGGAACCCCTACTGCAAAAGTTAATGTTGCTTCCACTCTCAGTGTCCTGTGCAAAGATGATGACTTGAGGAAGGCAGCAGCTGAAGCAATATATGAAGTTTCCTCTGATGGTCTTTCAAATGATCATGTTGGTATGAAAATTTTTATTACAGAAGGTGTAGTCCCAACCTTATGGAAACAGCTAAATCCCAAGAACAAAGAAGACAAAGTTGTGGAGGGTTTTATTACTGGAGCATTAAGAAATCTGTGTGGGGACAAAGATGGCTATTGGAAAGCAACATTAGAAGCTGGAGGTGTGGATATTATTGTGGGTCTATTGTCTTCAGATAATGCTGTTTCTCAGTCAAATGCAGCTTCTCTATTGGCACGTTTAATGCTGGCTTTCAGTGATAGCATCCCCAAAGTAATAGACTCTGGAGCAGTCCAAGCTTTACTTCAACTTGTTGGTCTGGAAAATGATATTTCTGTACGAGCTAGTGCTGCTGATGCCCTAGAGGCCCTTTCTTCAAAGTCTACCAAGGCTAAAAAGGCTATTGTCAGTGCAGATGGTGTTCCAATCCTTATTGGAGCTATAGTTGCTCCTTCTAAAGAGTGCATGCAAGGTGATCGTGGCCAGGCTCTGCAGGAGCACGCAACTCGAGCTTTAGCCAACATCTATGGTGGCATGTCTGCTTTAATACTATATCTTGGAGAACTTTCCCATTCTCCTCGCCTTGCTGCACCGATTGGTGATATAATTGGTGCTCTTGCTTATACACTCATGGTCTTTGAGGAAAAACTTGATGTTAATGAGGAACATTTTGATGCAACTAAGATAGAGGATATTCTAGTAACTCTTTTAAAGCCTCGAGACAACAAGCTAATTCAAGAGCGTGTCCTTGAGGCAATGGCTAGCCTTTATGGAAACGCCTATCTCTCAAAGTGGCTTATTCAGGCAGACTCAAAGAAGGTTCTCATTGGACTTATAACTATGGCTGCCCCTGATGTGCAAGAGTATCTGATACTTTCATTGACAAGCTTATGTTGTGATAGGATTGGAATATGGGAGGCCATAAAAAAAAGAGAAGGTATCCAATTACTCATATCATTGGTGGGATTATCCAGTGAGCAGCATCAAGAGTACTCAGTTCAATTGCTAGCAATCTTAACTGATCAGGTTGATGACAGCAAGTGGGCAATCACTGCTGCTGGAGGGATTCCACCATTGGTGCAGTTGTTGGAGACAGGATCACAGAAAGCAAGAGAGGAAGCAGCTAATGTTCTGTGGAGTTTGTGCTGTCACAGTGAAGATATTCGTGCTTGTGTTGAAAGTGCTGGAGCCATCCCGGCATTTTTGTGGCTTCTTAGGAGTGGTGGACCAAAAGGACAAGAAGCTTCTGCTATGGCACTTACAAAGCTTGTCCGAGTAGCTGATTCTGCCACAATTAATCAGCTATTAGCATTGCTCCTAGGGGATTCTCCAAGCTCCAAGGCCCATATAATTCGAGTTTTAGGTCATGTTCTCAATTCATCAAATGAGGAAACCCAAGAATATGCAGCTTCAGTCCTAGCTGATTTATTTATCAAAAGACAAGACATTTGTGATAGTCTTGCAACTGATGAGATTGTTCTTCCTTGCATGAAGCTTTTGACCAGCAAAACTCAAGTTGTTGCCACTCAGTCAGCTCGAGCATTAAGTGCTCTGTCCCGTCCAACAAAAAGCAAAGCTGCAAATAAGATGTCTTATATTGTAGAGGGTGACGTTGAGCCACTAATCAAGTTAGCTAAAACATCCTCTGTTGATGCTGCTGAAACTGCTGTGGCTGCATTGGCCAATCTTCTCTTTGATCCTTTTATTGCGGCTGAGGCTTTAGCTGAAGATGTTGTTTCAGCTTTAACAAGAGTTCTGGCAGAAGGAACCTTGGAAGGTAAACAAAATGCATCTCGTGCACTTCATCAATTATTGAAGCATTTTCCAATGAGTGACGTTTTCAAGGGTAATGCTCAATGCCGTTTCACTGTGCTTGCACTTGTTGATTCATTAAGAGCTATGGATATGGATGGAAGTGATGCTGCAGATGCTTTAGAAGTAATTGCACTGCTAGCCAGGACTAAACAGGGTGTCAACTTCACTTACCCTCCACGCTCAGCTCTGGGTGAAATACCATCATGCTTAGAACTTCTTGTCTGCTGCCTGGCTGAGGGGCCTTCCCTTGTGCAAGATAAGGCAATTGAAATTCTGTCTAGACTTTGTGGAGATCAGCCAGCTGTTCTTGGTGATTTGTTATTTGCCAGTTCCAGATCCATTGGTTCATTGGCTAATAGAATAATAAACTCCTCCAGTCTAGAAGTAAAAGTTGGAGGAGTTGCCTTACTAACTTGTGCTGCAAGGGAGAAGAAAGAACTTTCAATGGATTCGCTCGACACTTCTGGGTATCTGAAACCTTTAATATATTCTTTAGTTGATATGGTGAAGCAGAGTTGTAGCTGTTCTTCATTAGATACTGATGTTCTCACTCCTAGAGGTTTCATGGAGAGAAATGCATTTCAAGAAGTTGATGAGTTTGATATTCCTGATCCGGCCACAGTCTTGGGAGGTACTGTTGCCCTATGGTTGCTCTCAATTATTGCTTCTTTTCATATGAAGAGCAAGCTCACAATTATGGAAGCTGGTGGACTTGAAGCTCTCTCTGACAAACTTGTGAGACATACTTCAAATCCACAGGCAGAATATGAGGATACAGAAGGAATATGGATTAGTGCCTTGCTCTTGGCCATTTTATTTCAAGATGCAAATGTCATTTTATTGCCTGCAACAATGCGCATTATACCTTCTATCGCTCTTCTGCTAAGATCGGATGAAGTAATTGATAAATATTTTGCTGCCCAGGCTATGGCTAGTCTTGTTTGTAATGGTAATAAGGGAATAGATCTTGCCATTTCAAATTCTGGAGCTGTGGCTGGATTGTTAACTATTATTGGGCATATAGAGTCAAATATGCCGAATCTTATGGCTTTATCAGAAGAATTTTCTTTGGTGCGAAACCCTGATCAAGTTGTTTTGGATCATCTTTTTGAAATTGAAGATGTAAGATTGGGATCTACTGCACGGAAATCTATACCCCTCTTAGTGGATCTCTTGAGACCAATACCAGAAAGACCTAGTGCTCCACCAGTTGCTGTTAAACTCTTGATATCCATTGCAGATGGCAGTGATGCAAATAAATTACTCCTGGCTGAAGCTGGAGCTCTGGAAGCTTTGAACAAATACCTGTCCTTGAGCCCTCAAGACTCAACTGAGACAGCTATTTCCGAGTTATTGAGAATATTATTTTGCAATTCTGACCTGATTAAACATGAAGCATCGACAAGTTCATTGAACCAACTCATAGCTGTTTTGCGTCTTGGATCAAGAAATGCTAGATATAGTGCAGCAAGAGCACTTAATGAACTTTTTGATGCTGACAACATTAGAGACTCAGAATTAGCTAAACAGGCCATTCAACCATTGGTTGACATGCTTAACACGACATCAGGGAAAGGGAACCCACTTGAAAGTTTATACAAAGTATTGTCTTCTGCTTCATCCTTAGAATTGAAGAGCCATGCTGCACGACTCTGTTTTGCTCTTTTCGGTAATAGCAAGATCAGAGCAAATCCAGTTGCCTCAGAATGCCTGGAACCCCTTATATCACTGATGCAGTCTGGTTCTGGGACAGCAATAGAATATGGGGTTTGTGCCTTTGAGAGACTGTTGGAAGATGAACAACAAGTAGAGCTTGCAGCAGCCTATAATGTTGTGGATCTCCTTGTCAGCTTGGTTTCTGGTAAAAACTATCAGCTTATTGAGGCTGCCATATCTGCTCTTATCAAATTGGGAAAAGATAGGACTCCAAGCAAAGAAGACATGGTTAAAGCTGGCATTATCGATAATTGTCTCCAGCTACTCCAATCAGCACCTAGCTCATTATGCTCCACAATAGCTGAGCTGTTTCGCATTTTAACTAATAGTAATGCAATTGCTAGAAGTTCAGATGCTGCAGAAATAGTAGAACCCCTTTTCCATGTTTTGCTCCGTCGAGATTTTAACTTATGGGGACAGCATAGTGCCTTACAAGCACTTGTAAATATATTGGAGAAACCACAAAGTCTTGCAACCTTAAAGCTTACTCCTAGCCAAGTCATTGAACCCTTGATTTCCTTTCTGGAATCCCCGTCCCAAGCTATTCAGCAGCTTGGCACAGAACTGTTATCTCATCTTCTTGCACAGGAACATTTTCAGCAAGATATTACTACAAAGAATGCAGTTGTGCCCCTCGTACAGCTTGCTGGAATTGGAATATTGAACTTACAGCAAACAGCAATAAAAGCATTGGAAAAAATTTCCAAAAGCTGGCCAAAAGCCGTTGCTGATGCAGGAGGTATTTTTGAGCTTGCAAAAGTTATTATTCAAGATGACCCTCAGCCACCGCATGCACTCTGGGAATCAGCTGCTTTAGTTCTCTCTAATGTATTACGTTCCAATGCTGATTACTATTTTAAAGTTCCTGTGGTGGTCCTTGTAAAACTCTTGCACTCAAAACTTGAGAGTACAATTAGCATAGCTCTTAATGCTTTAATAGTTCATGAAAGAAGCGATGCTTCGAGTGCTGAACAGATGATGGAAGCTGGAGCTATAGATGCTCTGTTGGACCATTTAAGATCTCATCATTGTGAAGAAGCATCTGGTAGATTACTCGAAGCTTTATTTAACAACGTAAGAGTACGAGAGATGAAGGTATCTAAGTATGCTATCGCACCTTTATCCCAGTATCTGTTAGATCCACAAACCAGATCACAGTCTGGCAAGCTTCTTGCTGCTTTAGCTCTAGGAAATATTTCTCAGCATGAAGGACATGCTAGAGCTAGTGACTCCGTATCTGCATGTTGTGCATTGATAAGTTTACTTGAAGATCAGCCAACTGAAGAAATGACGATGGTGGCTATATGTGCATTGCAAAACTTTGTTATGAACAGCAGAACCAATAGGCGAGCTGTTGCAGAAGCTGGGGGCATACTGGTGATTCAGGAACTGCTACTGTCTCCAAATACAGAAGTTGCTGGACAAGCAGCATCACTGATCAAATTTTTGTTTTCTACCCACACACTGCAAGAATATGTGTCAAATGAACTGATCAGATCTTTGACAGCTGCACTGGAACGAGAGTTGTGGTCAACTGCCACAATCAACGAGGAGGTTTTGAAAACTCTGCATGTGATATTCATGAACTTCCCTAAGCTTCACATATCTGAAGCAGCAACCCTTTGCATTCCTCATTTGGTAGGGGCACTTAAATCTGGAGGTGAAGTGGCTCAAGACTCTGTACTTGACACCTTTTGCTTGCTAAAACAATCTTGGTCAACCATGCCAATAGATATAGCAAATTCTCAAGCTATGATTGCTGCTGAAGCCATCCCCATCTTGCAAATGCTCATGAAAACCTGCCCACCAAGTTTCCATGAGAGGGCGGATACTCTTCTGCACTGCTTACCAGGTTGTTTGACTGTCACCATTAAGCGTGGAAACAACCTCAAACAAACCATGGGAAGCACTAATGCATTCTGCAGATTGACCATAGGCAATGGTCCTCCCAAACAAACCAAGGTAGTGAATCATAGTACTTCTCCAGAATGGAAAGAAGGATTCACATGGGCATTTGATGTACCTCCAAAGGGCCAAAAGCTTCATATCATATGCAAAAGCAAGAATGCTTTTGGGAAGACAACTCTTGGAAGAGTCACTATCCAAATTGATAAAGTTGTGACAGAAGGGGTTTATAGTGGATTATTCAGTCTTAATCATGATGGCAACAAAGATGGTTCTTCCCGAACACTTGAAATTGAGATTATATGGTCCAACGGGATTTCTAATGATGACATTTGA 6177 0.4172 MSKSPSPEQRRSIYSSSQPMEFNEATGMDDPESTMATVANFVEQLHANLSSPLEKELITSRLLGIARKRKDARALIGSHAQAMPLFINILRNGTPTAKVNVASTLSVLCKDDDLRKAAAEAIYEVSSDGLSNDHVGMKIFITEGVVPTLWKQLNPKNKEDKVVEGFITGALRNLCGDKDGYWKATLEAGGVDIIVGLLSSDNAVSQSNAASLLARLMLAFSDSIPKVIDSGAVQALLQLVGLENDISVRASAADALEALSSKSTKAKKAIVSADGVPILIGAIVAPSKECMQGDRGQALQEHATRALANIYGGMSALILYLGELSHSPRLAAPIGDIIGALAYTLMVFEEKLDVNEEHFDATKIEDILVTLLKPRDNKLIQERVLEAMASLYGNAYLSKWLIQADSKKVLIGLITMAAPDVQEYLILSLTSLCCDRIGIWEAIKKREGIQLLISLVGLSSEQHQEYSVQLLAILTDQVDDSKWAITAAGGIPPLVQLLETGSQKAREEAANVLWSLCCHSEDIRACVESAGAIPAFLWLLRSGGPKGQEASAMALTKLVRVADSATINQLLALLLGDSPSSKAHIIRVLGHVLNSSNEETQEYAASVLADLFIKRQDICDSLATDEIVLPCMKLLTSKTQVVATQSARALSALSRPTKSKAANKMSYIVEGDVEPLIKLAKTSSVDAAETAVAALANLLFDPFIAAEALAEDVVSALTRVLAEGTLEGKQNASRALHQLLKHFPMSDVFKGNAQCRFTVLALVDSLRAMDMDGSDAADALEVIALLARTKQGVNFTYPPRSALGEIPSCLELLVCCLAEGPSLVQDKAIEILSRLCGDQPAVLGDLLFASSRSIGSLANRIINSSSLEVKVGGVALLTCAAREKKELSMDSLDTSGYLKPLIYSLVDMVKQSCSCSSLDTDVLTPRGFMERNAFQEVDEFDIPDPATVLGGTVALWLLSIIASFHMKSKLTIMEAGGLEALSDKLVRHTSNPQAEYEDTEGIWISALLLAILFQDANVILLPATMRIIPSIALLLRSDEVIDKYFAAQAMASLVCNGNKGIDLAISNSGAVAGLLTIIGHIESNMPNLMALSEEFSLVRNPDQVVLDHLFEIEDVRLGSTARKSIPLLVDLLRPIPERPSAPPVAVKLLISIADGSDANKLLLAEAGALEALNKYLSLSPQDSTETAISELLRILFCNSDLIKHEASTSSLNQLIAVLRLGSRNARYSAARALNELFDADNIRDSELAKQAIQPLVDMLNTTSGKGNPLESLYKVLSSASSLELKSHAARLCFALFGNSKIRANPVASECLEPLISLMQSGSGTAIEYGVCAFERLLEDEQQVELAAAYNVVDLLVSLVSGKNYQLIEAAISALIKLGKDRTPSKEDMVKAGIIDNCLQLLQSAPSSLCSTIAELFRILTNSNAIARSSDAAEIVEPLFHVLLRRDFNLWGQHSALQALVNILEKPQSLATLKLTPSQVIEPLISFLESPSQAIQQLGTELLSHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAIKALEKISKSWPKAVADAGGIFELAKVIIQDDPQPPHALWESAALVLSNVLRSNADYYFKVPVVVLVKLLHSKLESTISIALNALIVHERSDASSAEQMMEAGAIDALLDHLRSHHCEEASGRLLEALFNNVRVREMKVSKYAIAPLSQYLLDPQTRSQSGKLLAALALGNISQHEGHARASDSVSACCALISLLEDQPTEEMTMVAICALQNFVMNSRTNRRAVAEAGGILVIQELLLSPNTEVAGQAASLIKFLFSTHTLQEYVSNELIRSLTAALERELWSTATINEEVLKTLHVIFMNFPKLHISEAATLCIPHLVGALKSGGEVAQDSVLDTFCLLKQSWSTMPIDIANSQAMIAAEAIPILQMLMKTCPPSFHERADTLLHCLPGCLTVTIKRGNNLKQTMGSTNAFCRLTIGNGPPKQTKVVNHSTSPEWKEGFTWAFDVPPKGQKLHIICKSKNAFGKTTLGRVTIQIDKVVTEGVYSGLFSLNHDGNKDGSSRTLEIEIIWSNGISNDDI* 2059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01618 2058 CDD C2 1932 2022 - -
Rops9g01618 2058 SUPERFAMILY ARM repeat 170 440 IPR016024 -
Rops9g01618 2058 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 489 531 IPR000225 GO:0005515
Rops9g01618 2058 Gene3D C2 domain 1931 2055 IPR035892 -
Rops9g01618 2058 Gene3D - 1116 1266 IPR011989 -
Rops9g01618 2058 Gene3D - 1534 1930 IPR011989 -
Rops9g01618 2058 Gene3D - 37 348 IPR011989 -
Rops9g01618 2058 SMART arm_5 1156 1196 IPR000225 GO:0005515
Rops9g01618 2058 SMART arm_5 263 312 IPR000225 GO:0005515
Rops9g01618 2058 SMART arm_5 615 655 IPR000225 GO:0005515
Rops9g01618 2058 SMART arm_5 220 261 IPR000225 GO:0005515
Rops9g01618 2058 SMART arm_5 701 741 IPR000225 GO:0005515
Rops9g01618 2058 SMART arm_5 1670 1713 IPR000225 GO:0005515
Rops9g01618 2058 SMART arm_5 1339 1379 IPR000225 GO:0005515
Rops9g01618 2058 SMART arm_5 132 176 IPR000225 GO:0005515
Rops9g01618 2058 SMART arm_5 69 127 IPR000225 GO:0005515
Rops9g01618 2058 SMART arm_5 520 560 IPR000225 GO:0005515
Rops9g01618 2058 SMART arm_5 434 476 IPR000225 GO:0005515
Rops9g01618 2058 SMART arm_5 1757 1797 IPR000225 GO:0005515
Rops9g01618 2058 SMART arm_5 1466 1507 IPR000225 GO:0005515
Rops9g01618 2058 SMART arm_5 660 700 IPR000225 GO:0005515
Rops9g01618 2058 SMART arm_5 1381 1421 IPR000225 GO:0005515
Rops9g01618 2058 SMART arm_5 478 518 IPR000225 GO:0005515
Rops9g01618 2058 SMART arm_5 177 218 IPR000225 GO:0005515
Rops9g01618 2058 SMART arm_5 1298 1338 IPR000225 GO:0005515
Rops9g01618 2058 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1929 2035 IPR035892 -
Rops9g01618 2058 SUPERFAMILY ARM repeat 1117 1468 IPR016024 -
Rops9g01618 2058 MobiDBLite consensus disorder prediction 1 31 - -
Rops9g01618 2058 SUPERFAMILY ARM repeat 662 1059 IPR016024 -
Rops9g01618 2058 SUPERFAMILY ARM repeat 1480 1925 IPR016024 -
Rops9g01618 2058 Pfam C2 domain 1931 2030 IPR000008 -
Rops9g01618 2058 SUPERFAMILY ARM repeat 82 746 IPR016024 -
Rops9g01618 2058 Gene3D - 952 1100 IPR011989 -
Rops9g01618 2058 SMART C2_3c 1931 2027 IPR000008 -
Rops9g01618 2058 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 16 1264 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Rops9g01618 2058 MobiDBLite consensus disorder prediction 1 23 - -
Rops9g01618 2058 Gene3D - 1267 1533 IPR011989 -
Rops9g01618 2058 Gene3D - 349 592 IPR011989 -
Rops9g01618 2058 Pfam Armadillo/beta-catenin-like repeat 482 517 IPR000225 GO:0005515
Rops9g01618 2058 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 231 275 IPR000225 GO:0005515
Rops9g01618 2058 Gene3D - 593 920 IPR011989 -
Rops9g01618 2058 ProSiteProfiles C2 domain profile. 1911 2028 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01618 Rops-Chr9 28254821 28265674 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01618 449 739 U-box Gene Family AT3G46510 25.850 2.67e-08 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01618 - - aprc:113846793 3563.85