Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01617 ATGGCATCAGAACTTCAATTACCACCAGGATTCCGGTTCCACCCAACGGATGAAGAGCTCGTTATGCATTACCTCTGCCGGAAATGCGCTTCGCAGTCAATCGCCGTTCCGATCATAGCCGAAATCGACCTTTACAAATACGATCCATGGGACCTTCCAGGAATGGCGTCGTATGGAGAGAAGGAGTGGTATTTTTTCTCTCCAAGGGACAGGAAATATCCGAACGGTTCAAGGCCGAACCGGACTGCTGGAACTGGATACTGGAAGGCGACCGGAGCGGATAAACCGATTGGTCAGCCGAAACCGGTTGGGATTAAAAAGGCTTTGGTGTTTTACGCAGGGAAAGCGCCTAAAGGAGAGAAAACGAATTGGATCATGCACGAATATAGGCTCGCTGATGTGGATCGTTCTGTTCGCAAAAAGAATAGCTTGAGGCTAGATGATTGGGTGCTTTGTCGAATTTACAACAAAAAAGGCATCGTCGAGAAACAATCAAGCGGCTACCGCAAAATCGAATACTCCGAAACAGAGGACAAGAAGCCTGAGATTCTACCAACCGGCGGAGCATTTCTTCAGGCGCATCCTCCACCATCTGTGGCGGCGACAGCGACGGAGTGCGTTTACTTCGACACTTCCGACTCGGTCCCGAAGCTTCACACGACGGACTCGAGCTGCTCCGAGCACGTGGTGTCGCCGGAGTTCGCTACCGAAGTACAGAGCGAGCCCAAATGGAACGAGTGGGATAAGAATAAGAATAATAATAGCCTCGAGTTTCCTTATAATTACATGGATGCCACTCTCAACAGTGGCAACAGCTTCGGTTCTCAGTTCCAGGGAAGTAATCAGATGTCGCCGCTGCAGGATATCTTCATGTACCTCTCCAAGCCCTTCTGA 894 0.5011 MASELQLPPGFRFHPTDEELVMHYLCRKCASQSIAVPIIAEIDLYKYDPWDLPGMASYGEKEWYFFSPRDRKYPNGSRPNRTAGTGYWKATGADKPIGQPKPVGIKKALVFYAGKAPKGEKTNWIMHEYRLADVDRSVRKKNSLRLDDWVLCRIYNKKGIVEKQSSGYRKIEYSETEDKKPEILPTGGAFLQAHPPPSVAATATECVYFDTSDSVPKLHTTDSSCSEHVVSPEFATEVQSEPKWNEWDKNKNNNSLEFPYNYMDATLNSGNSFGSQFQGSNQMSPLQDIFMYLSKPF* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01617 297 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Rops9g01617 297 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
Rops9g01617 297 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Rops9g01617 297 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 238 - -
Rops9g01617 297 FunFam NAC transcription factor 16 161 - -
Rops9g01617 297 Gene3D NAC domain 16 161 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01617 Rops-Chr9 28239591 28241958 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01617 1 297 NAC Transcription Factor Family AT1G01720 73.333 7.05e-158 440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops9g01617 NAM 1.6e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01617 - - gmx:100805768 467.233