Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01616 ATGGAACGTGAAGAAGTGAAACAATCACCCCAGAAAACCCAAAACACTCAACTTGAGCAAGTTAACTCTGATTCTATTCTAGCAATTGGCTTACAAGAGCAAGATGGAACATTCACAACACTAGCAACATTTGAAAGTGAAAGTGAGGGTGACTCTTCTTTTGACAATGATTCCCTTGGTGATGCTGATTTTTTCCTTAGCCAAGAATTCGAAACGGATCTTCAGTTTCTTGAGAGTGAAGGAAGCAATGATTATGAAGAAATGGAAGGAGAAGAAGAAGATGATATTGATGTGGATGAAATGACTTATGAAGAGTTAATTGCATTAGGAGATTTTATAGGAAAAGAGAAGATGGGGTTATCAGCAAATGAAGTTTCTTCATGCTTGCATTCTTACACTTGCCATACTAATGAAAACAAAAGTGGTATTATTGATCGTTGTGTAATTTGTCAGGTTGAATATGAAGAAGGTGAAGCTGTGGTGGCACTTCAATGTGAACACCCTTATCATACAGATTGCATAACCAAGTGGCTTCAAATTAAGAAGCTTTGTCCAATATGTAGTAGTGAGATTTATGTTCCCAAGATTGTGAATTAA 597 0.3652 MEREEVKQSPQKTQNTQLEQVNSDSILAIGLQEQDGTFTTLATFESESEGDSSFDNDSLGDADFFLSQEFETDLQFLESEGSNDYEEMEGEEEDDIDVDEMTYEELIALGDFIGKEKMGLSANEVSSCLHSYTCHTNENKSGIIDRCVICQVEYEEGEAVVALQCEHPYHTDCITKWLQIKKLCPICSSEIYVPKIVN* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01616 198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 193 IPR013083 -
Rops9g01616 198 MobiDBLite consensus disorder prediction 1 22 - -
Rops9g01616 198 SUPERFAMILY RING/U-box 103 194 - -
Rops9g01616 198 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 78 193 IPR043312 -
Rops9g01616 198 Pfam Ring finger domain 146 187 IPR001841 -
Rops9g01616 198 ProSiteProfiles Zinc finger RING-type profile. 147 188 IPR001841 -
Rops9g01616 198 FunFam E3 ubiquitin ligase BIG BROTHER-related 112 194 - -
Rops9g01616 198 SMART ring_2 147 187 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01616 Rops-Chr9 28214689 28215557 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01616 93 192 C3H Transcription Factor Family AT3G63530 45.794 3.26e-26 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01616 K19045 - gmx:100777284 258.84