Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01610 ATGGCTTCCTTCCGTCGAAGAAGGACCCAAGCTCCCAAATCCTCATGCCTCGACGACGTCGTTTGCGAGAAATGTGGCTCCGGAGACTCTCCGTCCAAGTTGCTTCTTTGCGACAAATGCGACCGTGGTTACCACCTCTTTTGCCTCAGACCCATCCTCACTTCTGTCCCCAAAGGCTCTTGGATCTGCCCCTCTTGCTCCCACAACACCACCACCACCCATAACAACAAGCCCAAGTCTTTTCCTCTTTTGCAGACCAAAATCATTGACTTCTTTCGGATCCAACGATCCTCGGATGCACCCCTGATGTCAAATCAAGATACCCGGAAGAAGCGAAAGAGGGGTAGCAGCTTAGTGGTGTCGAAAAAGAAGAGGAAGCTGCTACCGTTCACTCCGAGTGAAGATCCTGAAAGGAGATTAGAACAGATGGCATCACTGGCAACAGCACTGACTGCTACTATAACAGAATTCAGCAATGAGCTTACCTACATGCCTGGAATGGCACCGAGGTCTGCTAATCGTCCTGCTTTGGAGCGTGGTGGAATGCAGGTCTTATCGAAAGAAGACACCGAGACTCTAAACTCGTGCAAAAGTATGATGGAAAGAGGAGAATGGCCTCCCCTCATGGTTGTTTTTGATCCTCTAGAAGGGTTCACTGTAGAAGCTGATAGATTCATTAGAGATTGGACAATAATAACAGAATATGTCGGAGATGTAGATTTTTTAAAGAATCGGGAAAATGACGATGGCGATAGCATAATGACACTTCTTTCAGCTTCTGATCCTTCACAAACGCTTGTCATCTGTCCAGATAAACGTAGCAACATAGCACGTTTCATTAATGGCATCAATAATCACACACCGGAAGGAAAAAAGAAGCAGAACGTAAAATGCGTGAGATTTGATGTCAATGGTGAATCTCGGGTTCTTTTAATTGCTAACAGAGATATAACCAAGGGGGAAAGGTTGTACTATGACTACAATGGATATGAACATGAATATCCAACAGAACATTTTGTCTAA 1023 0.4526 MASFRRRRTQAPKSSCLDDVVCEKCGSGDSPSKLLLCDKCDRGYHLFCLRPILTSVPKGSWICPSCSHNTTTTHNNKPKSFPLLQTKIIDFFRIQRSSDAPLMSNQDTRKKRKRGSSLVVSKKKRKLLPFTPSEDPERRLEQMASLATALTATITEFSNELTYMPGMAPRSANRPALERGGMQVLSKEDTETLNSCKSMMERGEWPPLMVVFDPLEGFTVEADRFIRDWTIITEYVGDVDFLKNRENDDGDSIMTLLSASDPSQTLVICPDKRSNIARFINGINNHTPEGKKKQNVKCVRFDVNGESRVLLIANRDITKGERLYYDYNGYEHEYPTEHFV* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01610 340 Pfam PHD-finger 21 68 IPR019787 -
Rops9g01610 340 Pfam SET domain 43 328 IPR001214 GO:0005515
Rops9g01610 340 SUPERFAMILY SET domain 198 328 IPR046341 -
Rops9g01610 340 Gene3D SET domain 112 340 IPR046341 -
Rops9g01610 340 SUPERFAMILY FYVE/PHD zinc finger 13 71 IPR011011 -
Rops9g01610 340 MobiDBLite consensus disorder prediction 100 120 - -
Rops9g01610 340 ProSitePatterns Zinc finger PHD-type signature. 22 66 IPR019786 -
Rops9g01610 340 SMART PHD_3 21 67 IPR001965 -
Rops9g01610 340 ProSiteProfiles Zinc finger PHD-type profile. 19 69 IPR019787 -
Rops9g01610 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 80 IPR013083 -
Rops9g01610 340 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 96 338 - -
Rops9g01610 340 CDD PHD_RSF1 22 66 - -
Rops9g01610 340 FunFam Histone-lysine N-methyltransferase ATXR5 111 340 - -
Rops9g01610 340 CDD SET_ATXR5_6-like 203 340 - -
Rops9g01610 340 ProSiteProfiles SET domain profile. 23 328 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01610 Rops-Chr9 28121741 28125264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01610 18 66 C2H2 Transcription Factor Family AT3G01460 48.980 5.11e-11 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Rops9g01610 SET 4.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01610 K24406 - gmx:100775247 545.814