Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01588 ATGTCACTGATTCTGTGTGTTGTGGCCATCTGTGCCGTTGATTTGGCTCATGGTGCTTCACCACACAATGCTCCATCTCCATCTGTGGATTGTTCAAACCTTGTGTTGACCATGGCTGATTGCTTGTCCTTTGTTACCAATGGCAGCACCGTGACCAAACCAGAAGGGACATGCTGTTCTGGCTTGAAGTCTGTGCTTAAGAGTGCTCCATCGTGTCTCTGTGAGGCTTTCAAGAGCAGTTCTCAGTTTGGTGTGGTCTTGAATGCTACTAAGGCTTTGACTATTCCTGCTGCTTGCAAAGTCTCTGCTTCTCCTTCTGGTATTGTGGATTTGGGTAATTTCATTCACTACATGGCTACATTTGTTTCTGGATTTGTTGTGGGTTTCACAGCTGTTTGGCAATTAGCACTTGTTACCCTTGCTGTAGTCCCTATGATAGCTGTAATTGGAGCCATTCACACAACCACTTTGGCCAAGCTATCTGGTAAAAGCCAAGAAGCTCTTTCTCAAGCTGGCAATATTGTGGAACAGACTGTTGTTCAAATTCGAGTGGTGCTAGCATATGTTGGGGAGAGTAGAGCATTGCATGCTTACTCTTCTGCTTTGAGGATTGCCCAGAAGAGTGGCTACAAAAGTGGATTTTCAAAGGGAATGGGATTGGGGGCAACTTACTTTGTTGTTTTCTGCAGCTATGCTCTTTTGCAAGGAAGTGTATCTGAAATTGGAACTCATGATGAGCTCTTTGTAGTGGCGCCTTGCCCTTGTCCTAGTAGCTGTTTTCCCTGTTGTTGTTACAACCACTGTTTTGCAGAAAATGTTCATGACTGGTTTCTCTGGTGA 840 0.4488 MSLILCVVAICAVDLAHGASPHNAPSPSVDCSNLVLTMADCLSFVTNGSTVTKPEGTCCSGLKSVLKSAPSCLCEAFKSSSQFGVVLNATKALTIPAACKVSASPSGIVDLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPMIAVIGAIHTTTLAKLSGKSQEALSQAGNIVEQTVVQIRVVLAYVGESRALHAYSSALRIAQKSGYKSGFSKGMGLGATYFVVFCSYALLQGSVSEIGTHDELFVVAPCPCPSSCFPCCCYNHCFAENVHDWFLW* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01588 279 PANTHER ABC TRANSPORTER B FAMILY 110 234 IPR039421 -
Rops9g01588 279 CDD AAI_LTSS 38 101 - -
Rops9g01588 279 Gene3D - 29 104 IPR036312 -
Rops9g01588 279 SMART aai_6 31 114 IPR016140 -
Rops9g01588 279 Pfam ABC transporter transmembrane region 112 233 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops9g01588 279 SUPERFAMILY ABC transporter transmembrane region 111 234 IPR036640 GO:0005524|GO:0016020
Rops9g01588 279 PRINTS Plant phospholipid transfer protein signature 30 46 IPR000528 GO:0006869|GO:0008289
Rops9g01588 279 PRINTS Plant phospholipid transfer protein signature 86 103 IPR000528 GO:0006869|GO:0008289
Rops9g01588 279 PRINTS Plant phospholipid transfer protein signature 53 67 IPR000528 GO:0006869|GO:0008289
Rops9g01588 279 FunFam Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 28 108 - -
Rops9g01588 279 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 29 106 IPR036312 -
Rops9g01588 279 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 111 234 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops9g01588 279 Pfam Probable lipid transfer 23 106 IPR016140 -
Rops9g01588 279 Gene3D ABC transporter type 1, transmembrane domain 105 243 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01588 Rops-Chr9 27728555 27734825 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01588 111 234 Calmodulin-binding Proteins AT2G36910 87.097 8.04e-67 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01588 K05658 - pop:7486496 226.868