Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01579 ATGGTTAAGACAGAGAACAAGATCCAGAAAGAGCCATCAAAGCCAATGAAACCTTTATCTTCATCAGCAGCAACATCAAATGACAAGAAGAAGAAGTATAAGGGAGTTAGAATGAGGAGCTGGGGTTCATGGGTATCAGAGATTAGAGCACCAAACCAGAAAACAAGAATATGGTTAGGCTCTTATTCAACTGCAGAAGCAGCAGCTAGAGCTTATGATGCTGCACTTTTATGCCTTAAAGGTTCCTCAGCTAATCTTAACTTCCCTTCAAGCTCTTCTTCACAGTTCATTCCTCAAGACACTGTTATGTCACCCAAATCAATCCAAAGAGTAGCTGCAGCTGCTGCTAATAGTTTTGTGGACAATGCTGCTGACAACCCACCTTCACCTCCTCCTGCTTCAACTTCATCCTCCTCATTGGTCTCATCCCCATCAATGTCATCTTCTCCTTCAGATCAAATAGATGATGATGTCTCACTATTTTCATCATTTGGGGCCCACACTAGCTGTGACCAACCAAATGAATCAATGGCTATGATGGAGTCTTGGTATGGCTTTGACGGCCTACAATCCCCAAAACATGTTGATCAAATGCTAAGTGGGGCTTTGTTTGATATTGATTCAACACAACTGTTTGATGATCTGTATGAAGAAAGTGACATTCGCTTGTGGAACTTCTGCTGA 684 0.4211 MVKTENKIQKEPSKPMKPLSSSAATSNDKKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSANLNFPSSSSSQFIPQDTVMSPKSIQRVAAAAANSFVDNAADNPPSPPPASTSSSSLVSSPSMSSSPSDQIDDDVSLFSSFGAHTSCDQPNESMAMMESWYGFDGLQSPKHVDQMLSGALFDIDSTQLFDDLYEESDIRLWNFC* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01579 227 CDD AP2 31 91 IPR001471 GO:0003700|GO:0006355
Rops9g01579 227 PRINTS Ethylene responsive element binding protein signature 55 71 IPR001471 GO:0003700|GO:0006355
Rops9g01579 227 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Rops9g01579 227 MobiDBLite consensus disorder prediction 135 153 - -
Rops9g01579 227 FunFam ethylene-responsive transcription factor ERF014-like 31 91 - -
Rops9g01579 227 Pfam AP2 domain 32 81 IPR001471 GO:0003700|GO:0006355
Rops9g01579 227 SUPERFAMILY DNA-binding domain 32 90 IPR016177 GO:0003677
Rops9g01579 227 Gene3D AP2/ERF domain 31 90 IPR036955 GO:0003700|GO:0006355
Rops9g01579 227 SMART rav1_2 32 95 IPR001471 GO:0003700|GO:0006355
Rops9g01579 227 MobiDBLite consensus disorder prediction 1 35 - -
Rops9g01579 227 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
Rops9g01579 227 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 17 173 - -
Rops9g01579 227 MobiDBLite consensus disorder prediction 121 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01579 Rops-Chr9 27499457 27500140 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01579 1 226 AP2-EREBP Transcription Factor Family AT1G21910 46.275 4.39e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops9g01579 AP2 4.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01579 - - gsj:114381844 281.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01579 9 27499457 27500140 Rops9g01579 9 27499457 27500140 ECH