Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01577 ATGCCAGTGAACCGTGGCCAAGGTCAACCCACAAGGTGGTATCAGCTATGCTTTGCTCCTACTAGTGGAGATAGTTCAGATGATTCAGACACAGAATCTGTAGTACTACCTCCCAGTACTCCAATTCCAACTAGTACATGGCAAGAACTTTCTCCACCAGAGTCGCCACCTTTTCTACTGCCACCACCACCACTGCCTGTGGAGTTCTGGGATGATGAATATGATCTTGAATCACCACATGGTATATATCAACCTCCTAGTCCAAGTCTTGCATTTATGTATCATGATCCACTTGATTCCTCTTCTGTGGTTGATCCTGAAGCTGATCAAAGTGACTTCTCTCAGGTTCTTCCGGATGGTATCATCAATGCTATTAGAAGGGTGAGAATCTCAGAGTTGGATGAGAGAGATAGACAGTCTCATAATAACTGTCCCATTTGCATGGAGGAGTTTAAAGTGGGTGACCAAGCATGTCATTTACCATGCATCCATGTCTACCATTCTGAATGCATTCATCGTTGGCTTAACAACAACAGAACCTGTCCTATTTGTAGGCTTGAGTTGGATGATTTGGAAGGTCAAGGTGGTTGCTCTTATAGCATAGTGGATAATAGTTTGGACCCTGAACCTCCACCACCACCACCTGTAACTCATATAGACTGGGATTTCTTTTTTCATTACTTGGAGGGTTCACAAATTTCAGAAGGTGACAACTCGGATGAAGATGGCTATCATAGTGCATGTGACGAGCTAAGTGATTCTCATGAAGATGGAGGTATAGTTGGAGCTTCTTAG 795 0.4365 MPVNRGQGQPTRWYQLCFAPTSGDSSDDSDTESVVLPPSTPIPTSTWQELSPPESPPFLLPPPPLPVEFWDDEYDLESPHGIYQPPSPSLAFMYHDPLDSSSVVDPEADQSDFSQVLPDGIINAIRRVRISELDERDRQSHNNCPICMEEFKVGDQACHLPCIHVYHSECIHRWLNNNRTCPICRLELDDLEGQGGCSYSIVDNSLDPEPPPPPPVTHIDWDFFFHYLEGSQISEGDNSDEDGYHSACDELSDSHEDGGIVGAS* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01577 264 SUPERFAMILY RING/U-box 123 190 - -
Rops9g01577 264 Pfam Ring finger domain 142 185 IPR001841 -
Rops9g01577 264 MobiDBLite consensus disorder prediction 17 52 - -
Rops9g01577 264 MobiDBLite consensus disorder prediction 235 264 - -
Rops9g01577 264 PANTHER SI:CH211-59O9.10 122 190 - -
Rops9g01577 264 SMART ring_2 144 184 IPR001841 -
Rops9g01577 264 MobiDBLite consensus disorder prediction 238 256 - -
Rops9g01577 264 CDD RING-H2_PA-TM-RING 144 185 - -
Rops9g01577 264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 190 IPR013083 -
Rops9g01577 264 ProSiteProfiles Zinc finger RING-type profile. 144 185 IPR001841 -
Rops9g01577 264 MobiDBLite consensus disorder prediction 17 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01577 Rops-Chr9 27454617 27455411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01577 69 189 C3H Transcription Factor Family AT1G68180 35.156 1.27e-16 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01577 - K11982 ccaj:109817940 216.083