Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01565 ATGAGCAAACCCAGAACTCACAGAAAACCCACCACCACCAAGCATGAGAACCAAAACCAAAGCCAACAGCCTCAGAAGACAGAGAAACAACCCTCATGGGCAATGGTAAGAGGCTTATTGACTTGTAGAAATGTCCAAGTGCAAAAGCAGCAGAAGAAGCCTGAAGAGAAACAACATCTAAGGCAGAACTTGGAGCAGAAAAAACTTCAAAAGGAAAGAGTTCCAGAAGAAAACAGCAAGAAATGCAAGAAAATGAAATGTTCAGGTTCGCTTTGTAACAACACCAAGGTCATGGCAAGGCCTGAAACAGTTACCCCTGATGTCCACAAGAAAAGGGTCTCAATGGGTGTTGCGTGTAACTACAATGATGCTTATAGCAGATCCATGCAAACACCTCAAAATGAAACCAATGGAATTGTGTCTGCATCTTCCTCTTCCTCTTCTTCTTCTATATCAGCATGTTCTAATTCTTCTGTCAGTGGTTCTTTTAGGGGAATGTCATTCAGGAAACTCTCTAGTTGTTATGAGTGTAGAATGGTGGTTGACCCTGTTTTGGGTATCACTAAAGATCCTTCTCTTAGGGGTAGCATCTGTTCTTGCCCTCACTGTGGTGAAATCTTCATGAAAGCTGAAAGCTTGGAGCACCATCAATCTGTTAAGCATGCAGTTTCTGAGCTGGGTCCAGAGGATACAAGCAAGAACATAGTAGAAATCATATTCCACTCTAGCTGGCTAAAGAAACAATCCCCAGTTTGCAAAATTGACCGAATCCTTAAAGTCCACAACAACCAGAAAACAATTTGCAAATTCGAAGAGTACAGAGACTCCATCAAAGCCAAAGCCACAAAACTCTCCAAGAAACACCCTCGTTGCATAGCTGATGGAAACGAACTACTTAGGTTCCACTGCACCACCTTTGTGTGCAACCTAGGCCTAAACGGGTCCTCCAACCTTTGCAACTCAACACCACAATGCAATGTCTGTAGCATAATCAAGAACGGTTTCAAGGTCACAGGAGAATCTAATGGTGAAAAGGGTATCTTGACAACGGCAACAAGTGGGAAGGCACATGACAAAGCTGGGGCTTCACTCGATGAAGGTGATGACAAGAGGGCAATGTTGGTTTGCAGGGTGATAGCAGGGAGGGTGAAGAAGAATAGTAATAATGTAGAAGGTGGGGGTGTGGAAGAGTATGATTCGGTTGCTGGTGCTGTTGTTGGGGCTTATTCAAATTTGGATGAGTTATATGTTTTCAACTATAGAGCTATATTGCCTTGCTTTGTTGTAATCTATAGAGGCTTTTGA 1305 0.4299 MSKPRTHRKPTTTKHENQNQSQQPQKTEKQPSWAMVRGLLTCRNVQVQKQQKKPEEKQHLRQNLEQKKLQKERVPEENSKKCKKMKCSGSLCNNTKVMARPETVTPDVHKKRVSMGVACNYNDAYSRSMQTPQNETNGIVSASSSSSSSSISACSNSSVSGSFRGMSFRKLSSCYECRMVVDPVLGITKDPSLRGSICSCPHCGEIFMKAESLEHHQSVKHAVSELGPEDTSKNIVEIIFHSSWLKKQSPVCKIDRILKVHNNQKTICKFEEYRDSIKAKATKLSKKHPRCIADGNELLRFHCTTFVCNLGLNGSSNLCNSTPQCNVCSIIKNGFKVTGESNGEKGILTTATSGKAHDKAGASLDEGDDKRAMLVCRVIAGRVKKNSNNVEGGGVEEYDSVAGAVVGAYSNLDELYVFNYRAILPCFVVIYRGF* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01565 434 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 84 431 - -
Rops9g01565 434 MobiDBLite consensus disorder prediction 1 36 - -
Rops9g01565 434 SUPERFAMILY ADP-ribosylation 223 433 - -
Rops9g01565 434 Gene3D - 221 432 - -
Rops9g01565 434 ProSiteProfiles Zinc finger C2H2 type domain profile. 198 226 IPR013087 -
Rops9g01565 434 FunFam C2H2-like zinc finger protein 222 432 - -
Rops9g01565 434 MobiDBLite consensus disorder prediction 15 30 - -
Rops9g01565 434 MobiDBLite consensus disorder prediction 130 153 - -
Rops9g01565 434 ProSitePatterns Zinc finger C2H2 type domain signature. 198 221 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01565 Rops-Chr9 27085034 27087044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01565 4 432 C2H2 Transcription Factor Family AT1G75710 41.509 4.66e-99 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops9g01565 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01565 - - gmx:100817333 603.594