Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01546 ATGGACATATATGAGCCATTCCATCAAGTGAGCATGTGGGGGGACAACTTTAAAGTTGATGGAAGCCTGAATTCAATTGCTTCCCCAATGTTAATGAACACTACCATTGAGAACAAGTCTGAATGTACTCATGAATCAAGGGAAACTTCTGGAGATGATCAAGAGACTACTGACAAAGCTGTTAGTAAGGTGGTAAGACGTCTAGCCCAAAATCGTGAGGCTGCTCGGAAATGTCGGCTGCGGAAGAAGGCTTATGTTCAACAATTGGAAACAAGCCGTTTGAAGCTCATGCAGTTGGAGCTGGAGATTGAGAATGCAAGAAAGCAGGGTCTACACATAGGTGGTGCATTAGATGTCGGTTATATGGGATCATCTGGAACAATAAACTCAGGGATATCTGTTTTTGAGATTGAATATGGACGTTGGGTTGAAGAGCAAGATAGACAGAATGAAGAACTAAGAAATGCATTGCAAACTCATGCATCTGACATGCAGCTTCATCTACTTGTTGAGAGTAGCTTGAACCATTACGCAAATCTTTTCAGGATGAAAGCAGATGCTGCAAAAGCTGATGTCTTTTATTTAATCTCTGGTTCGTGGAGAGCATCAGTAGAACGCCTTTTTCTTTGGATTGGAGGATCCCGCCCATCACAGCTTCTAAATATCATTGTACCACAGCTTGAGCCTTTGACTGATCAACAACTTGTCAGCATTAACAACCTCCGTCTGTCATCTCAGCAAGCTGAAGATGCTCTCTCACTAGGGTTGGATAAACTCCAGCAGAGTCTGGTCCAAAGCTTACAAACTGATCCTTTGGTTGTAGGAAACTATGGATTTCAGATGGCTGCTTCCATGGACAAAGGTGAAGCACTAGAAGGTTTTGTAAACCAGGCAGATCACCTGAGGCAACAAACTCTGCTGTACATGTCTCGCATACTGACAATTGGGCAAGCTGCTCAAGGCTTGCTGGCTATGGGGGAATACTTTCACCGTCTTCGCACTCTTAGTTCTTTGTGGACTTCACATTCATGTGATGATCCTGCCTACCCTACTCAACACCAAAATTGA 1068 0.4354 MDIYEPFHQVSMWGDNFKVDGSLNSIASPMLMNTTIENKSECTHESRETSGDDQETTDKAVSKVVRRLAQNREAARKCRLRKKAYVQQLETSRLKLMQLELEIENARKQGLHIGGALDVGYMGSSGTINSGISVFEIEYGRWVEEQDRQNEELRNALQTHASDMQLHLLVESSLNHYANLFRMKADAAKADVFYLISGSWRASVERLFLWIGGSRPSQLLNIIVPQLEPLTDQQLVSINNLRLSSQQAEDALSLGLDKLQQSLVQSLQTDPLVVGNYGFQMAASMDKGEALEGFVNQADHLRQQTLLYMSRILTIGQAAQGLLAMGEYFHRLRTLSSLWTSHSCDDPAYPTQHQN* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01546 355 SUPERFAMILY Leucine zipper domain 66 95 IPR046347 GO:0003700|GO:0006355
Rops9g01546 355 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 66 81 IPR004827 GO:0003700|GO:0006355
Rops9g01546 355 MobiDBLite consensus disorder prediction 39 59 - -
Rops9g01546 355 Gene3D - 62 112 - -
Rops9g01546 355 PANTHER TRANSCRIPTION FACTOR TGA9 1 343 - -
Rops9g01546 355 Coils Coil 143 163 - -
Rops9g01546 355 SMART brlzneu 59 119 IPR004827 GO:0003700|GO:0006355
Rops9g01546 355 Coils Coil 82 109 - -
Rops9g01546 355 FunFam BZIP family transcription factor 62 111 - -
Rops9g01546 355 Pfam Seed dormancy control 151 224 IPR025422 GO:0006351|GO:0043565
Rops9g01546 355 MobiDBLite consensus disorder prediction 40 59 - -
Rops9g01546 355 Pfam bZIP transcription factor 63 92 IPR004827 GO:0003700|GO:0006355
Rops9g01546 355 ProSiteProfiles DOG1 domain profile. 132 342 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01546 Rops-Chr9 26562969 26567294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01546 1 351 Calmodulin-binding Proteins AT1G77920 55.313 2.81e-134 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Rops9g01546 DOG1 1.5e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01546 K14431 - gmx:100775882 570.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01546 9 26562969 26567294 Rops10g01830 10 33991418 33995401 PCT