Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01540 ATGTCTCGTCATCACTGCAGCAGCCCTTTGAAGATAACACGACCACCATCTTCATTCGGGTGGATATGCAGAACTTGCATCTCGGCAAAGGCAAGCCATCGTCCAGTGTTTTTCTTAGCTGACACTATTAATAGGAGGGTCCTAGCTAGAGGAAGAAGAAACCTCAATTTGCTGAGAACTTCGGCTGAAGTTCTGGGAAAGGGTAGTTATGGTACTGCATATAAGGCTATATTGGAGGAGTCAACAACAGTTGTGGTGAAAAGGTTGAAAGAAGTGGTGGTAGGCAAGAGGGACTTTGAACAGCAGATGGAGATTATGGGATGGGTTGGACAGCATGCAAATGTCGTGCCACTCCGCGCTTACTATTATCCCAAAGATGAAAAGCTTTTGGTTTATGACTATGTCCCAGGTGGCAACTTATCCACACTCTTGCATGGCAGTCGGACAGATGGAAGAACTCCATTAGATTGGGACTCCCGAGTTAAAATATCACTTGGCATTGCCAAAGGAATCGCTCACATTCATTCTGTTGGTGGTGCCAAATTCACACATGAAAACATTAAGTCCTCTAATGTCCTCATCAACCAAGATAATGATGGCTGCATTTCTGATTTTGGCCTAACCCCACTTATGACTGTTCCTGCAACCCCTTCTAGAGCTGCAGGTTATCGTGCTCCTGAGGTGATTGAAACCCGAAAGCACTCTCATAGGGCAGATGGGTATAGCTTGGATGTCCTCCTTCTCGAGACGCTTACAGGGAAGGCACCTCTCCAATCTCCGGGACGCGAAGATATGGCTAATCTGCTTAAGTGTATTGAAAGTGGTGTTTTAATAAATTTGAAGGACAGTGAGGGCTGGATACCATTGCACTGGGCTATGTATCGTGGCCACCTTAATGTCACAGAGTTGCTTGCGGAAAGGAATATTGATGTAAATGCAAAGGATAATGATGGGAGTTCCCCACGTGGCATGTGTAAGTCAAACTAG 987 0.4559 MSRHHCSSPLKITRPPSSFGWICRTCISAKASHRPVFFLADTINRRVLARGRRNLNLLRTSAEVLGKGSYGTAYKAILEESTTVVVKRLKEVVVGKRDFEQQMEIMGWVGQHANVVPLRAYYYPKDEKLLVYDYVPGGNLSTLLHGSRTDGRTPLDWDSRVKISLGIAKGIAHIHSVGGAKFTHENIKSSNVLINQDNDGCISDFGLTPLMTVPATPSRAAGYRAPEVIETRKHSHRADGYSLDVLLLETLTGKAPLQSPGREDMANLLKCIESGVLINLKDSEGWIPLHWAMYRGHLNVTELLAERNIDVNAKDNDGSSPRGMCKSN* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01540 328 ProSiteProfiles Ankyrin repeat profile. 284 316 IPR002110 GO:0005515
Rops9g01540 328 SUPERFAMILY Ankyrin repeat 261 322 IPR036770 -
Rops9g01540 328 SMART ANK_2a 284 313 IPR002110 GO:0005515
Rops9g01540 328 Pfam Protein kinase domain 62 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g01540 328 Gene3D Transferase(Phosphotransferase) domain 1 135 282 - -
Rops9g01540 328 PANTHER OS05G0588300 PROTEIN 56 259 - -
Rops9g01540 328 Gene3D - 283 328 IPR036770 -
Rops9g01540 328 ProSiteProfiles Protein kinase domain profile. 59 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g01540 328 Gene3D Phosphorylase Kinase; domain 1 60 134 - -
Rops9g01540 328 Pfam Ankyrin repeats (many copies) 261 304 IPR002110 GO:0005515
Rops9g01540 328 SUPERFAMILY Protein kinase-like (PK-like) 63 276 IPR011009 -
Rops9g01540 328 ProSiteProfiles Ankyrin repeat region circular profile. 284 316 - -
Rops9g01540 328 ProSitePatterns Protein kinases ATP-binding region signature. 65 96 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01540 Rops-Chr9 26444793 26445859 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01540 56 276 Receptor kinase-like Gene Family AT5G58300 71.041 9.08e-111 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Rops9g01540 Pkinase 3.1e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01540 - - gmx:100796171 371.318