Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops9g01534 | ATGGGGCGTGTTAAACTTGAGATAAAGAGAATAGAGAACACCACGAATCGACAAGTTACATTCTCAAAACGTAGAAATGGCCTCATCAAGAAAGCTTACGAGTTATCCATCCTTTGTGATATTGATATTGCCCTTATAATGTTTTCTCCATCAGGAAAAATTAGCCATTTTTCAGGCAGAAGGAGGATCGAGGATGTTTTTACTCGTTACATTAATCTACCTGACCAAGAAAGAGATAACGCTGTAAGTTTTCCTGAGCTACCCTACCGCAGGGGTATTCAGAACAAAGAGTATTTGCTTAGGACGCTTCAGCAATTGAGGAGTGAAAATGACATAGCTCTTCAGCTGGCCAATCCGGGAGACATTAACTCCGAGATTGAGGAACTCCAACAAGAAGTTAGTAGGTTACAGCAACAACTCCAAATGGCCGAGGAGCAGATAAGGATATATGAACCCGACCCATTAAAGATGACATCTATGGGGGAGCTTGAAAACAGCGAAAAACACCTTGTAGATACCTTGACACGTGTCTTACAGAGAAAGGAATATCTGTTGAGCAATCATCTATCTTCGTATGATCCATCTGGTATTCAGGGGATGCCAACCTCTTTCGAGAATGTAGGTTGGTTGCAGGATGGTAGTCAGAACCATCCCCAGATTTTTGATGCGTCCGCTCCTTTAGATCCTCTCAGGGATTTGTCCTCCACCGTGTATGGTTCATTTTCTCAAGGGACGAGTTCAAATGCTGATCCACGAGGCATGAGTGAATGCCATGTGACAAATCCAAGTGATGGGAACCTTCAAGCATGGCCTCAAGGATACACATTATATCCTCATATTCAACATGACATGGTGGGGCCCGACATGCCAGATATGATGCCACATGGACAAGTGAACCTCCCAATAACTGCCTCACACGTGGAACCACCCAAAAATGAATCTGCAGAATATGATCAATGTAAACAACCTCATCATCATCAGCTTAATGGTCAATGA | 996 | 0.4317 | MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGKISHFSGRRRIEDVFTRYINLPDQERDNAVSFPELPYRRGIQNKEYLLRTLQQLRSENDIALQLANPGDINSEIEELQQEVSRLQQQLQMAEEQIRIYEPDPLKMTSMGELENSEKHLVDTLTRVLQRKEYLLSNHLSSYDPSGIQGMPTSFENVGWLQDGSQNHPQIFDASAPLDPLRDLSSTVYGSFSQGTSSNADPRGMSECHVTNPSDGNLQAWPQGYTLYPHIQHDMVGPDMPDMMPHGQVNLPITASHVEPPKNESAEYDQCKQPHHHQLNGQ* | 332 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops9g01534 | 331 | FunFam | MADS-box transcription factor 41 | 13 | 92 | - | - | |
Rops9g01534 | 331 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Rops9g01534 | 331 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Rops9g01534 | 331 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Rops9g01534 | 331 | CDD | MADS_MEF2_like | 2 | 75 | IPR033896 | GO:0000977|GO:0045944 | |
Rops9g01534 | 331 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Rops9g01534 | 331 | MobiDBLite | consensus disorder prediction | 302 | 331 | - | - | |
Rops9g01534 | 331 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Rops9g01534 | 331 | SUPERFAMILY | SRF-like | 2 | 79 | IPR036879 | GO:0003677|GO:0046983 | |
Rops9g01534 | 331 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 3 | 208 | - | - | |
Rops9g01534 | 331 | Coils | Coil | 126 | 146 | - | - | |
Rops9g01534 | 331 | Gene3D | - | 13 | 86 | IPR036879 | GO:0003677|GO:0046983 | |
Rops9g01534 | 331 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Rops9g01534 | 331 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops9g01534 | Rops-Chr9 | 26212020 | 26215943 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops9g01534 | 1 | 304 | Type I MADS-box Gene Family | AT1G22130 | 60.510 | 1.37e-122 | 353 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MADS-MIKC | Rops9g01534 | SRF-TF | 1.1e-25 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops9g01534 | - | - | pvu:PHAVU_008G170400g | 582.793 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Rops9g01534 | 9 | 26212020 | 26215943 | Rops9g01534 | 9 | 26212020 | 26215943 | ECH |