Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01534 ATGGGGCGTGTTAAACTTGAGATAAAGAGAATAGAGAACACCACGAATCGACAAGTTACATTCTCAAAACGTAGAAATGGCCTCATCAAGAAAGCTTACGAGTTATCCATCCTTTGTGATATTGATATTGCCCTTATAATGTTTTCTCCATCAGGAAAAATTAGCCATTTTTCAGGCAGAAGGAGGATCGAGGATGTTTTTACTCGTTACATTAATCTACCTGACCAAGAAAGAGATAACGCTGTAAGTTTTCCTGAGCTACCCTACCGCAGGGGTATTCAGAACAAAGAGTATTTGCTTAGGACGCTTCAGCAATTGAGGAGTGAAAATGACATAGCTCTTCAGCTGGCCAATCCGGGAGACATTAACTCCGAGATTGAGGAACTCCAACAAGAAGTTAGTAGGTTACAGCAACAACTCCAAATGGCCGAGGAGCAGATAAGGATATATGAACCCGACCCATTAAAGATGACATCTATGGGGGAGCTTGAAAACAGCGAAAAACACCTTGTAGATACCTTGACACGTGTCTTACAGAGAAAGGAATATCTGTTGAGCAATCATCTATCTTCGTATGATCCATCTGGTATTCAGGGGATGCCAACCTCTTTCGAGAATGTAGGTTGGTTGCAGGATGGTAGTCAGAACCATCCCCAGATTTTTGATGCGTCCGCTCCTTTAGATCCTCTCAGGGATTTGTCCTCCACCGTGTATGGTTCATTTTCTCAAGGGACGAGTTCAAATGCTGATCCACGAGGCATGAGTGAATGCCATGTGACAAATCCAAGTGATGGGAACCTTCAAGCATGGCCTCAAGGATACACATTATATCCTCATATTCAACATGACATGGTGGGGCCCGACATGCCAGATATGATGCCACATGGACAAGTGAACCTCCCAATAACTGCCTCACACGTGGAACCACCCAAAAATGAATCTGCAGAATATGATCAATGTAAACAACCTCATCATCATCAGCTTAATGGTCAATGA 996 0.4317 MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGKISHFSGRRRIEDVFTRYINLPDQERDNAVSFPELPYRRGIQNKEYLLRTLQQLRSENDIALQLANPGDINSEIEELQQEVSRLQQQLQMAEEQIRIYEPDPLKMTSMGELENSEKHLVDTLTRVLQRKEYLLSNHLSSYDPSGIQGMPTSFENVGWLQDGSQNHPQIFDASAPLDPLRDLSSTVYGSFSQGTSSNADPRGMSECHVTNPSDGNLQAWPQGYTLYPHIQHDMVGPDMPDMMPHGQVNLPITASHVEPPKNESAEYDQCKQPHHHQLNGQ* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01534 331 FunFam MADS-box transcription factor 41 13 92 - -
Rops9g01534 331 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Rops9g01534 331 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Rops9g01534 331 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Rops9g01534 331 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Rops9g01534 331 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Rops9g01534 331 MobiDBLite consensus disorder prediction 302 331 - -
Rops9g01534 331 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Rops9g01534 331 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Rops9g01534 331 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 208 - -
Rops9g01534 331 Coils Coil 126 146 - -
Rops9g01534 331 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Rops9g01534 331 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Rops9g01534 331 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01534 Rops-Chr9 26212020 26215943 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01534 1 304 Type I MADS-box Gene Family AT1G22130 60.510 1.37e-122 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Rops9g01534 SRF-TF 1.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01534 - - pvu:PHAVU_008G170400g 582.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01534 9 26212020 26215943 Rops9g01534 9 26212020 26215943 ECH