Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01521 ATGGCAGCTACAATGGATTTCTACAACAGTCCAGAACTTCAATCAGATCCATTCAGAGGTGAGTTAATGGAAGTTCTAGAACCTTTTATGAAAAGTCCTTCCACAACTCCCTCTGTATCCTCACCCATATCTTCAAATTCTTACCTACCTTCTACTTCTTCAACTTCAACTTCTTACTTCCAACCCTCTCCTTTTCTTCCTACACAGCCTAATTTCTACACAGATGGTTGCTCCTCCCTATTTCCCTCTGGCTTCTCAGACAGCCAAAACTTGATAGGCTTTGGGCAACCAAGTTCTGTTCTTGGGCTCAACAACCTAACCCAATCTCAAATTAACCAGATCCAAGCCCAGATCCAGCTCCAGGCCCAGCAAAACAATCCCACCCAAAGTTTCCTCGGGCCCAAGCCCATACCCATGAAGCAAGTGGGTACCCCTCCAAAACCCACCAAGCTCTACAGAGGGGTAAGGCAACGGCATTGGGGAAAATGGGTAGCGGAAATAAGACTCCCAAAGAACCGAACAAGGCTTTGGCTTGGAACCTTTGACACTGCAGAGGAAGCTGCTTTGGCTTATGACAGAGCAGCATATAGGCTCAGAGGTGACTTGGCTAGACTCAACTTCCCGAACCTGAAGCACCAAGGTTCATGTGTTGAGGGTGCTTTTGGAGAGTACAAGCCTCTTCATTCCTCTGTTGATGCAAAGCTTGATGCTATTTGTGAGAGCTTGGGTGATATGCAGAAACAAGGGAAGCAAGAGAAGAAGGGTAAGAGGTCTTCTACATCAAAACCGGGTTCAATTTCAAAAAAGGTTCAGCCACCAAAGGTTGAAAAGATGGAAGCTTCTTCTTTGTCTCCGGTTATGACTGAGAGTGAGGCCTCTGGTGATTCTTCTCCTCCTCTATCTGATCTTACCTTTGATGATGTCACTGAGCCACAGTGGGAAGCTGCTTCTGAACATTTTAATCTGCAGAAGTTCCCTTCTTATGAGATTGATTGGGATTCTCTGTGA 1008 0.4583 MAATMDFYNSPELQSDPFRGELMEVLEPFMKSPSTTPSVSSPISSNSYLPSTSSTSTSYFQPSPFLPTQPNFYTDGCSSLFPSGFSDSQNLIGFGQPSSVLGLNNLTQSQINQIQAQIQLQAQQNNPTQSFLGPKPIPMKQVGTPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDRAAYRLRGDLARLNFPNLKHQGSCVEGAFGEYKPLHSSVDAKLDAICESLGDMQKQGKQEKKGKRSSTSKPGSISKKVQPPKVEKMEASSLSPVMTESEASGDSSPPLSDLTFDDVTEPQWEAASEHFNLQKFPSYEIDWDSL* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01521 335 MobiDBLite consensus disorder prediction 283 303 - -
Rops9g01521 335 MobiDBLite consensus disorder prediction 31 53 - -
Rops9g01521 335 PRINTS Ethylene responsive element binding protein signature 152 163 IPR001471 GO:0003700|GO:0006355
Rops9g01521 335 PRINTS Ethylene responsive element binding protein signature 174 190 IPR001471 GO:0003700|GO:0006355
Rops9g01521 335 MobiDBLite consensus disorder prediction 245 311 - -
Rops9g01521 335 MobiDBLite consensus disorder prediction 132 151 - -
Rops9g01521 335 SUPERFAMILY DNA-binding domain 151 208 IPR016177 GO:0003677
Rops9g01521 335 FunFam Ethylene-responsive transcription factor 2 150 209 - -
Rops9g01521 335 Gene3D AP2/ERF domain 151 209 IPR036955 GO:0003700|GO:0006355
Rops9g01521 335 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 3 335 - -
Rops9g01521 335 SMART rav1_2 151 214 IPR001471 GO:0003700|GO:0006355
Rops9g01521 335 Pfam AP2 domain 152 200 IPR001471 GO:0003700|GO:0006355
Rops9g01521 335 CDD AP2 150 210 IPR001471 GO:0003700|GO:0006355
Rops9g01521 335 ProSiteProfiles AP2/ERF domain profile. 151 208 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01521 Rops-Chr9 25660944 25661951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01521 1 335 AP2-EREBP Transcription Factor Family AT1G78080 52.222 2.80e-97 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops9g01521 AP2 7.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01521 K09286 - gmx:100800478 341.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01521 9 25660944 25661951 Rops10g01803 10 33561125 33574921 PCT