Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01518 ATGACGAACCAGAAATCACGTGTGAATAACACACTTGTGGAATTGGCAATGTCGATTTCAAACTCAAGTGTTTTACCAACAACGGCAGTACCTGAATTAATGGCTTTGCTTGGTGGGTTTTTGGGACAACCCCAGAAGAAGCTAATGAAAACATTGGAAGATGGAAATGGAAAAGGAGGAGCTAAAGTTAACACATGGATTGATTCGATGAGAGCTTCTTCTCCTACTCGAGTCAAATCTAACCGAGAAAGTCCTTGGACTCTTTACCATCCTTCGGCGCTGAACTTGTTTGATCAGATAATATATAATTCGAAAGGGAAACAGATTGTGACCTTTCTTGATTATGATGGAACCCTCTCCCCGATCGTTGCAGATCCAGATAAAGCATACATGAGTAAAAAGATGAGAGCGACATTAAAGGACATAGCAAGGCATTTCCCCACAGCCATCGTTAGTGGAAGGTGCATAGACAAGCTATATAGCTTTGTAAGATTGGCAGAACTGTATTATGCAGGGAGTCATGGCATGGACATCAAGGGACCAAGAACTAAGAAAGGTAATAATGAAGGTGTACTTTTACAGCCTGCAAGTGAATTCCTACCCATGATCAATGAGGTGTACAATATTTTGGTGGAAAAAACAAAGTCTGTCCCAGGGGCTAAGGTAGAAAATAACAAGTTTTGCTTGTCCGTGCACTTTCGCTGTGTTGACGAAAAGAGTTGGGCAGCATTGGCTGAGCAAGTTAGCTTAGTACTCAATGAGTACCCAAAACTTAAGCTAACTCAAGGAAGAAAAGTGTTGGAGATTCGACCAACCATAAAATGGGACAAGGGCAAGGCTCTTGAATTCTTGTTACAGTCACTAGGATATGCGAATTCTAATAATGTATTTCCAATTTATATTGGTGATGATCGAACTGATGAAGATGCTTTTAAGGTTTTACGCAGTAGGGGCCAAGGGATTGGGATTCTTGTTTCTAAAATTCCAAAAGAAACTGAAGCTTCCTACACTTTGCAAGATCCATCAGAGGTTGGACAATTTTTGCGGCATTTAGTTGAGTGGAAAAAAAGGAGTCCTCACTCCCACAAGTTGTAG 1095 0.4091 MTNQKSRVNNTLVELAMSISNSSVLPTTAVPELMALLGGFLGQPQKKLMKTLEDGNGKGGAKVNTWIDSMRASSPTRVKSNRESPWTLYHPSALNLFDQIIYNSKGKQIVTFLDYDGTLSPIVADPDKAYMSKKMRATLKDIARHFPTAIVSGRCIDKLYSFVRLAELYYAGSHGMDIKGPRTKKGNNEGVLLQPASEFLPMINEVYNILVEKTKSVPGAKVENNKFCLSVHFRCVDEKSWAALAEQVSLVLNEYPKLKLTQGRKVLEIRPTIKWDKGKALEFLLQSLGYANSNNVFPIYIGDDRTDEDAFKVLRSRGQGIGILVSKIPKETEASYTLQDPSEVGQFLRHLVEWKKRSPHSHKL* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01518 364 CDD HAD_TPP 112 345 - -
Rops9g01518 364 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 53 361 IPR044651 GO:0004805|GO:0005992
Rops9g01518 364 NCBIfam trehalose-phosphatase 107 352 IPR003337 GO:0003824|GO:0005992
Rops9g01518 364 FunFam Trehalose 6-phosphate phosphatase 202 361 - -
Rops9g01518 364 NCBIfam HAD-IIB family hydrolase 112 316 IPR006379 -
Rops9g01518 364 SUPERFAMILY HAD-like 112 355 IPR036412 -
Rops9g01518 364 Pfam Trehalose-phosphatase 112 342 IPR003337 GO:0003824|GO:0005992
Rops9g01518 364 Gene3D - 196 272 - -
Rops9g01518 364 Gene3D - 112 338 IPR023214 -
Rops9g01518 364 FunFam Trehalose 6-phosphate phosphatase 196 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01518 Rops-Chr9 25603083 25605580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01518 98 348 Trehalose Biosynthesis Gene Families AT1G23870 25.856 7.98e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01518 K01087 - gmx:100792915 609.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01518 9 25603083 25605580 Rops10g01801 10 33515974 33518787 PCT