LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops9g01511	ATGGGGAAGACGTGGAATGGGAACTATTTGCAAGACAGTCCCATCGTAGTTAAATGGAAGAAACCTTTTGCTGGCTTATCACATGGAAAGGGATTTGTACTAGAAAATATAGGTATTGAGGCTAAGCAACCCAACTCCGCCATTGATAAGTGTGTCAGGGTTCAATTCCTCAAAAATGGGAACAACATTGATGTAGAGAGTGATGAAGTATTGATAGCTAGATTTGGATGA	231	0.4026	MGKTWNGNYLQDSPIVVKWKKPFAGLSHGKGFVLENIGIEAKQPNSAIDKCVRVQFLKNGNNIDVESDEVLIARFG*	77

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops9g01511	76	Gene3D	-	8	76	IPR012340	-
	Rops9g01511	76	FunFam	40S ribosomal protein S23	8	76	-	-
	Rops9g01511	76	PANTHER	30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER	18	63	IPR006032	GO:0003735\|GO:0005840\|GO:0006412
	Rops9g01511	76	Pfam	Ribosomal protein S12/S23	17	63	IPR006032	GO:0003735\|GO:0005840\|GO:0006412
	Rops9g01511	76	SUPERFAMILY	Nucleic acid-binding proteins	15	72	IPR012340	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops9g01511	Rops-Chr9	25447348	25447578	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops9g01511	3	76	Cytoplasmic Ribosomal Protein Gene Family	AT5G02960	53.488	2.25e-23	84.7

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops9g01511	K02973		-	atri:130813873	85.8853

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