Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01503 ATGGGAAGATCCCCATGCTGCGATGAATATGGCCTTAAGAAAGGACCCTGGACTCCTGAAGAAGATCAAAAGCTGGTTAATAGCATTCAGAAACATGGCCATGGAAGTTGGAGAGCTCTCCCTAAGTTAGCAGGTCTTAACAGATGTGGAAAAAGCTGTAGGCTAAGGTGGACAAATTATTTGAGGCCAGATATCAAGAGGGGGAAATTTTCTCAAGAAGAGGAGCAGACAATTCTGCATCTCCATTCCATCCTTGGAAACAAATGGTCAGCAATTGCAACCCATCTTCCTGGCAGGACAGATAATGAGATCAAGAATTTCTGGAATACTCACTTAAAGAAAAAGTTGATTCAGACGGGTTTTGATCCAATGACACACCAGCCAAGAACTGATCTTTTTTCCACCTTACCATATCTACTAGCTTTGGCCAACATGACGAACCTTATGGATAATCAATCTTTAGAAGAACAAGCTGTGAGGTTACATGCAGAGGCCGTTCAGCTGGCAAAGCTTCAAGGCCTTAATTATTTACTCCAATCTACAAGCTCATTAAGCACCAACTCCTATGACCAAAGTACCATCACAAGCATTGAAGCTTTCAATTTGTTAAATTCAATCACCAATGTCAAAGACAACCCAGTTTTGGACTATCCACTACTGGATAATCAAGCCTCATTTTCTAATGGGATTCCTAGCTCCCAACCACTTCACCAATCAAGCATGTTTTCTCATATTTTAGACCCAGAAGTCAGTTTCAGGTCACAATCTTGTTTGAATAATGAGCAGGGTCAAGGTACCAACTTTACAATGATAGGTCAAGGGGATCACACAGTTGATGAATCTCTATGGAATATAACATCTCCTACTCCATCTATTCCCCTAAATGTGACAGGGACCACAACTAGCAATCCAGGAGATGCCAGCAGCAGCACTTCTAGCTATGGAGGAACCTCATCTTGTTGGCCTGAACTATTTTTTGAGGATCCCATTATGCATGAGCTATAG 1005 0.4179 MGRSPCCDEYGLKKGPWTPEEDQKLVNSIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQTGFDPMTHQPRTDLFSTLPYLLALANMTNLMDNQSLEEQAVRLHAEAVQLAKLQGLNYLLQSTSSLSTNSYDQSTITSIEAFNLLNSITNVKDNPVLDYPLLDNQASFSNGIPSSQPLHQSSMFSHILDPEVSFRSQSCLNNEQGQGTNFTMIGQGDHTVDESLWNITSPTPSIPLNVTGTTTSNPGDASSSTSSYGGTSSCWPELFFEDPIMHEL* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01503 334 Gene3D - 69 116 - -
Rops9g01503 334 CDD SANT 69 112 IPR001005 -
Rops9g01503 334 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Rops9g01503 334 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops9g01503 334 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 238 - -
Rops9g01503 334 CDD SANT 16 61 IPR001005 -
Rops9g01503 334 SMART sant 13 63 IPR001005 -
Rops9g01503 334 SMART sant 66 114 IPR001005 -
Rops9g01503 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Rops9g01503 334 Gene3D - 11 67 - -
Rops9g01503 334 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Rops9g01503 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 61 IPR017930 -
Rops9g01503 334 MobiDBLite consensus disorder prediction 289 318 - -
Rops9g01503 334 FunFam MYB-related transcription factor 13 66 - -
Rops9g01503 334 Coils Coil 151 171 - -
Rops9g01503 334 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops9g01503 334 FunFam Transcription factor MYB39 69 130 - -
Rops9g01503 334 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01503 Rops-Chr9 25255477 25257163 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01503 1 331 MYB Transcription Factor Family AT1G34670 54.496 2.53e-115 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops9g01503 Myb_DNA-binding 2.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01503 K09422 - gmx:100811162 501.516