LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops9g01500	ATGGCTGATTCACTATCAGTTCATGTTAGTTCTCCACCTAAGCTTGAATTCTCTACTAAACAAGCAGATAGAATTACCCATGAAGGTGAAGACTCTGCATCTAGCATCCAAAAGGCTATTGCTGAGTTCGTGGGTACGTACATTCTTATATTTGCGGGCTGTGGGGTTGCTCTTATCAATGAGAGGTTGTCACTTAAAATAGTAGGCATAGCAATAGTTTCAGGCCTAGCTTTGACGGTGGTTACATATTCAGTTGGTCATGTCTCTGGTGGCCATTTCAATCCTGCAGTTACAATTGCCTTGGCTGTTGTCCAAAAAATTCAACTGAAACTCGTGCCTACTTATGTGTTGTGCCAGTTGATGGGTGCTACACTGGCCACTCTCACGCTCAAGGTGTTGTATCATGACAAGGTGGATATTGGAGTAACAGTGACTCAATACTTGAGCTCAACTTCTGATCTTGAAGCATTGGTGTGGGAATTCATAATCACTTCCATACTGATGCTCACTATTTGCGGTGTTGCCACTGATCACAGAGGGGTACCGTTTGTTATAATTTACCATCGATTATCTGAGAGTAACTATGTTTAA	591	0.4213	MADSLSVHVSSPPKLEFSTKQADRITHEGEDSASSIQKAIAEFVGTYILIFAGCGVALINERLSLKIVGIAIVSGLALTVVTYSVGHVSGGHFNPAVTIALAVVQKIQLKLVPTYVLCQLMGATLATLTLKVLYHDKVDIGVTVTQYLSSTSDLEALVWEFIITSILMLTICGVATDHRGVPFVIIYHRLSESNYV*	197

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops9g01500	196	PRINTS	Major intrinsic protein family signature	37	56	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Rops9g01500	196	PRINTS	Major intrinsic protein family signature	74	98	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Rops9g01500	196	PRINTS	Major intrinsic protein family signature	111	130	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Rops9g01500	196	PRINTS	Major intrinsic protein family signature	159	177	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Rops9g01500	196	PANTHER	AQUAPORIN NIP2-1	30	180	IPR034294	-
	Rops9g01500	196	ProSitePatterns	MIP family signature.	92	100	IPR022357	-
	Rops9g01500	196	Pfam	Major intrinsic protein	32	181	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Rops9g01500	196	Gene3D	Glycerol uptake facilitator protein.	8	187	IPR023271	-
	Rops9g01500	196	SUPERFAMILY	Aquaporin-like	35	185	IPR023271	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops9g01500	Rops-Chr9	25202649	25203787	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops9g01500	36	181	Major Intrinsic Protein MIP	AT4G18910	47.368	6.31e-38	129

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops9g01500	K09874		-	gmx:100798380	280.026