Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01491 ATGGCTCACCCACATTATCGATCACAGTTCGGAGACACAACATTCACCAAGGTTTTTGTTGGAGGATTAGCTTGGGAGACTCCAACTGAAGAAATGCGCAAATATTTTGAACAGTTTGGAGACATTCTTGAAGCTGTCATCATCACTGATAAGAACACAGGAAAATCTAAAGGCTACGGATTCGTAACATTCCGTGATCCAGAATCAGCTAGAAGGGCTTGTGCTGATCCAAATCCTGTAATAGATGGAAGAAGAGCAAATTGTAACATTGCTTCACTAGGAAGGCCTAGACCATCACCTCCAAGAGGGAGGGGTACATTTCAAGGTGGGGTGGGGACAGGAGCACCGGGTGCGCCGGCAGCGTACGGTGGTGTTCCGGCGGCAGGGCCACCACCACCACCATTACTTTACCCTCCATATGGCTACCCTACCTACACTCCTGATTATGGGTACCACCAAGCCACATTGTATAACCCTCAGATTCAGCAACCACAATACTATCATCAACAACTCTATGGACCTTCATCTTCCACCATGGCTTCTCCTTATTACTATGGTTATTCTATGCAAGCACCAAGGGGTACATTTTCTACACCCCAAGCACATCGTTTGCCAGCTGGACCGTCCTATCTATACTACCCTACACCAATGGAAGGTTCCTTCTCTGCATATCGTCCAACTCAACAACCAGCAATAAGGCAACCCCCTCCTTCCCCTAGTGATTCACAGACTCAGCAGCGTACTTCCGAGACAGCAGCTGGAGTAGTTATAACTTCAGAAAGTTCAAATACTCAAGGGAAGAACTAA 807 0.4709 MAHPHYRSQFGDTTFTKVFVGGLAWETPTEEMRKYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACADPNPVIDGRRANCNIASLGRPRPSPPRGRGTFQGGVGTGAPGAPAAYGGVPAAGPPPPPLLYPPYGYPTYTPDYGYHQATLYNPQIQQPQYYHQQLYGPSSSTMASPYYYGYSMQAPRGTFSTPQAHRLPAGPSYLYYPTPMEGSFSAYRPTQQPAIRQPPPSPSDSQTQQRTSETAAGVVITSESSNTQGKN* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01491 268 MobiDBLite consensus disorder prediction 238 268 - -
Rops9g01491 268 MobiDBLite consensus disorder prediction 222 268 - -
Rops9g01491 268 Gene3D - 2 112 IPR012677 -
Rops9g01491 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Rops9g01491 268 FunFam RNA-binding protein 24-B isoform X1 3 112 - -
Rops9g01491 268 PANTHER BOULE-RELATED 5 245 - -
Rops9g01491 268 SMART rrm1_1 17 89 IPR000504 GO:0003723
Rops9g01491 268 CDD RRM_RBM24_RBM38_like 16 91 - -
Rops9g01491 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
Rops9g01491 268 SUPERFAMILY RNA-binding domain, RBD 11 116 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01491 Rops-Chr9 25066883 25072260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01491 12 92 C2H2 Transcription Factor Family AT2G19380 39.506 4.33e-15 73.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01491 9 25066883 25072260 Rops9g01491 9 25066883 25072260 ECH