Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01489 ATGAATCAAAACCAGCTTCAGCCTCTACCTCTGCTAAGCAGTTTCCTTGGTTCAGCTCCACAACAAGAGCCTTTACTACTAAACCAAAACTCCAAAGCATGCTATAGTCAAGCTGAGGATGTCACAGTGGCCTTACACATTGGCCTCCCTGACAGCAATTCCAGTGGCTCCACCAATAATAATAATAATGGATTTATGAATGGCACAACCCAATTTCCTAACAATTACTGGATACCCACTCAGGAGCAGATCCTCATTGGATTCAGTCATTTCTCTTGTCCTGTTTGCTTCAAAACCTTCAATCGCTATAACAACCTTCAGATGCATATGTGGGGACATGGTTCACAGTATCGTAGAGGACCAGACTCACTGAAACGAACTCATCCACGACCTTTGTTAGACATTCCATGCTATTGTTGCGCAAGAGGATGCAAGAACAACATAGAGCACCCGAGAGCTAAGCCTCTGAAGGATTTCCGAACGCTGCAGACACACTACAAGAGGAAGCACGGGGCCAAACCCTTTACGTGCCGCAAGTGTGGGAAGCCTTTGGCTGTCAAGGGTGACTGGCGAACCCATGAGAAAAACTGTGGCAAGCGCTGGCTTTGTATTTGTGGTTCCGACTTCAAACACAAGAGGTCCCTTAAAGACCATATCAAAGCGTTTGGATTTGGACACAGCCCTTTTTCTTCTTCATCTGAGGGCATGTAA 711 0.4599 MNQNQLQPLPLLSSFLGSAPQQEPLLLNQNSKACYSQAEDVTVALHIGLPDSNSSGSTNNNNNGFMNGTTQFPNNYWIPTQEQILIGFSHFSCPVCFKTFNRYNNLQMHMWGHGSQYRRGPDSLKRTHPRPLLDIPCYCCARGCKNNIEHPRAKPLKDFRTLQTHYKRKHGAKPFTCRKCGKPLAVKGDWRTHEKNCGKRWLCICGSDFKHKRSLKDHIKAFGFGHSPFSSSSEGM* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01489 236 FunFam Zinc finger protein WIP2 144 226 - -
Rops9g01489 236 Pfam Zinc finger, C2H2 type 91 110 IPR013087 -
Rops9g01489 236 Gene3D Classic Zinc Finger 90 113 - -
Rops9g01489 236 SUPERFAMILY beta-beta-alpha zinc fingers 86 113 IPR036236 -
Rops9g01489 236 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 118 IPR013087 -
Rops9g01489 236 Gene3D Classic Zinc Finger 144 225 - -
Rops9g01489 236 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Rops9g01489 236 PANTHER ZINC FINGER PROTEIN WIP2 9 230 IPR043584 GO:0003700|GO:0010468
Rops9g01489 236 SUPERFAMILY beta-beta-alpha zinc fingers 157 195 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01489 Rops-Chr9 25042393 25043799 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01489 1 231 C2H2 Transcription Factor Family AT1G34790 59.438 3.66e-100 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops9g01489 zf-C2H2 0.002 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01489 - - gmx:547675 398.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01489 9 25042393 25043799 Rops9g01489 9 25042393 25043799 ECH