Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops9g01489 | ATGAATCAAAACCAGCTTCAGCCTCTACCTCTGCTAAGCAGTTTCCTTGGTTCAGCTCCACAACAAGAGCCTTTACTACTAAACCAAAACTCCAAAGCATGCTATAGTCAAGCTGAGGATGTCACAGTGGCCTTACACATTGGCCTCCCTGACAGCAATTCCAGTGGCTCCACCAATAATAATAATAATGGATTTATGAATGGCACAACCCAATTTCCTAACAATTACTGGATACCCACTCAGGAGCAGATCCTCATTGGATTCAGTCATTTCTCTTGTCCTGTTTGCTTCAAAACCTTCAATCGCTATAACAACCTTCAGATGCATATGTGGGGACATGGTTCACAGTATCGTAGAGGACCAGACTCACTGAAACGAACTCATCCACGACCTTTGTTAGACATTCCATGCTATTGTTGCGCAAGAGGATGCAAGAACAACATAGAGCACCCGAGAGCTAAGCCTCTGAAGGATTTCCGAACGCTGCAGACACACTACAAGAGGAAGCACGGGGCCAAACCCTTTACGTGCCGCAAGTGTGGGAAGCCTTTGGCTGTCAAGGGTGACTGGCGAACCCATGAGAAAAACTGTGGCAAGCGCTGGCTTTGTATTTGTGGTTCCGACTTCAAACACAAGAGGTCCCTTAAAGACCATATCAAAGCGTTTGGATTTGGACACAGCCCTTTTTCTTCTTCATCTGAGGGCATGTAA | 711 | 0.4599 | MNQNQLQPLPLLSSFLGSAPQQEPLLLNQNSKACYSQAEDVTVALHIGLPDSNSSGSTNNNNNGFMNGTTQFPNNYWIPTQEQILIGFSHFSCPVCFKTFNRYNNLQMHMWGHGSQYRRGPDSLKRTHPRPLLDIPCYCCARGCKNNIEHPRAKPLKDFRTLQTHYKRKHGAKPFTCRKCGKPLAVKGDWRTHEKNCGKRWLCICGSDFKHKRSLKDHIKAFGFGHSPFSSSSEGM* | 237 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops9g01489 | 236 | FunFam | Zinc finger protein WIP2 | 144 | 226 | - | - | |
Rops9g01489 | 236 | Pfam | Zinc finger, C2H2 type | 91 | 110 | IPR013087 | - | |
Rops9g01489 | 236 | Gene3D | Classic Zinc Finger | 90 | 113 | - | - | |
Rops9g01489 | 236 | SUPERFAMILY | beta-beta-alpha zinc fingers | 86 | 113 | IPR036236 | - | |
Rops9g01489 | 236 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 91 | 118 | IPR013087 | - | |
Rops9g01489 | 236 | Gene3D | Classic Zinc Finger | 144 | 225 | - | - | |
Rops9g01489 | 236 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 93 | 113 | IPR013087 | - | |
Rops9g01489 | 236 | PANTHER | ZINC FINGER PROTEIN WIP2 | 9 | 230 | IPR043584 | GO:0003700|GO:0010468 | |
Rops9g01489 | 236 | SUPERFAMILY | beta-beta-alpha zinc fingers | 157 | 195 | IPR036236 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops9g01489 | Rops-Chr9 | 25042393 | 25043799 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops9g01489 | 1 | 231 | C2H2 Transcription Factor Family | AT1G34790 | 59.438 | 3.66e-100 | 291 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Rops9g01489 | zf-C2H2 | 0.002 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops9g01489 | - | - | gmx:547675 | 398.667 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Rops9g01489 | 9 | 25042393 | 25043799 | Rops9g01489 | 9 | 25042393 | 25043799 | ECH |