Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01481 ATGAAGAAATGTTATGTTACCTCTTCAGGGGAAGCCCACACGTGCAGATGGGAATCAATAATGACTTTGGAGGTTGAAGGGATTGTTTCAGTGAAGGTCATTCTAACTGTGGCAACTCCACTTCTGAAGAAGGTGAACGTGACTTTCCTCGAATGGTTTAAACCTGCAACTGAAAGCACAATACAGCAGCTGCGCTATGGAGGAAGGGATCAACTGTGCATGCATCTGTACGGAAGACTTTGGTTTACAAATTTAAGCCGCTTCTTGAGGAAGGCCAGGTTGCCAGTTTCAGATGAGGATTCGTCTCAGGGATTAAGTATCATATCTGATTCTCCCCGTTACTCTTTGGAGGATGATTTTATAAAAGCAACTCCTCCGAAAACCATTGAGGAATTGAAGGATTGTAAACATCCTGGATTGTATGCTGTTTTAGCTACTATAAATTGTGTTACCAATGGCCCAGACTGGTGGTACACAGCTTGCAAGTGTAATAAAGCTGTGCATCCAGATTCTGGAATGTACTATTGTGAAAGGTGTAATTGCCATGTTGTCAATGTGATTCCAAGGTATCGGATCAAATTGAGGGTGGTTGATCGCAGTGACAGTGCTACTTTTGTCGTTTGGGATCGGGATGGGACTATGCTACTTAAGAAATCATGCTCTCAGCTTCTTGATAGTCTTAAGAATGGAGGAGGTCCAGTTTCTCATCCTTCAGAATTTGATGACTGCCTTATTCAAAAGGAATTATTGTTTAAAGTTGACTTAAAGGCATTGCTGAAGTCAGAATTCGAACCTTCTTACAGGGTTGTAAGAGTTTGTGCTGATGAATCTGTTATAACTAAGTTTAAACAAATTGCTAACATGAACCTTAGCAATGAGGATGTTGTGAATTTATCTTCTGAACCTGAATTCTTCGAAAGCTCTCAAGGTCAAAATTCAGAACCCCTTTTCACCCCAATTAAAAGGCCTTTGAAGAGAAAAATGAATCCTTCTTCATCCATGAATCGTCGTCGAAGGTTCCCTATTCAGGTCGAAGTCGAAAATGATCTTGATGGGGGATATGGAATATTACCAGAAGCTTTTTGTTTTGAATTTGCCCCAACAATAGGGACATCCGCGAAAATTATTACATCTACTGGAGATGAATTTGATATTCAGTTCATGCAAACATTGTTTGGAGGCTCATTCACAAATGGTTGGATGGATTTCCTTAATGAATACAAGATATCCAATAACCGTCGTGTTATTTTGAAATACCATGGTGAATCATGGTTCAGAATTTACAAAGATGACCAGGAAAGTCATCCCAATCTAATTCAACCCCCATACATGTATCAAATTAATCTGACTCCTTACTCTATTTTGTCTCAGCAGGCTCTTCCTTTTCAATTTGTCCGTGAAGGTTTGAATCTGAGGCGCAAAAAAGTTACTATCAAGGTGCAAGATGGAAGGTCGTGGATTTGTGGATTGTACCATCCAGGGAGAAACGACAATGAAGCTAGGATCAATACGGGTTGGAAGAAGTTTGCACAAGAGATGAATCTGAAGCCTTCGAACTCTCCACACTTTGAAGTGCTGGATCGGAAAAAAAAATTTACTTCAGGCTCATATATCATGATTTGA 1623 0.3999 MKKCYVTSSGEAHTCRWESIMTLEVEGIVSVKVILTVATPLLKKVNVTFLEWFKPATESTIQQLRYGGRDQLCMHLYGRLWFTNLSRFLRKARLPVSDEDSSQGLSIISDSPRYSLEDDFIKATPPKTIEELKDCKHPGLYAVLATINCVTNGPDWWYTACKCNKAVHPDSGMYYCERCNCHVVNVIPRYRIKLRVVDRSDSATFVVWDRDGTMLLKKSCSQLLDSLKNGGGPVSHPSEFDDCLIQKELLFKVDLKALLKSEFEPSYRVVRVCADESVITKFKQIANMNLSNEDVVNLSSEPEFFESSQGQNSEPLFTPIKRPLKRKMNPSSSMNRRRRFPIQVEVENDLDGGYGILPEAFCFEFAPTIGTSAKIITSTGDEFDIQFMQTLFGGSFTNGWMDFLNEYKISNNRRVILKYHGESWFRIYKDDQESHPNLIQPPYMYQINLTPYSILSQQALPFQFVREGLNLRRKKVTIKVQDGRSWICGLYHPGRNDNEARINTGWKKFAQEMNLKPSNSPHFEVLDRKKKFTSGSYIMI* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01481 540 ProSiteProfiles B3 DNA-binding domain profile. 443 540 IPR003340 GO:0003677
Rops9g01481 540 SUPERFAMILY DNA-binding pseudobarrel domain 340 429 IPR015300 -
Rops9g01481 540 CDD RPA1_DBD_C 127 272 IPR047192 -
Rops9g01481 540 Gene3D - 429 534 IPR015300 -
Rops9g01481 540 Pfam Replication factor-A C terminal domain 142 242 IPR013955 -
Rops9g01481 540 Gene3D - 120 287 IPR012340 -
Rops9g01481 540 Pfam B3 DNA binding domain 457 532 IPR003340 GO:0003677
Rops9g01481 540 SUPERFAMILY Nucleic acid-binding proteins 125 269 IPR012340 -
Rops9g01481 540 SUPERFAMILY DNA-binding pseudobarrel domain 443 527 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01481 Rops-Chr9 24706045 24713442 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops9g01481 Rep_fac-A_C 6.8e-13 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01481 - - vun:114165619 194.512