Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01464 ATGGAAATGAAACACAGAAAGCTCTTCCCTTCAGAAACTACCACAAACCAAACCCAAGAAGACTGTTATGGTTTCTGTGACCCATCATGCCCTTATAACTGTTACTCTAACCCTGACTACTATTTCTCACCACCACCACCATCTATTGAACACTCAAGCCAAGTTAACCATCTCTCCTCCTACTTGATCATCCTTGTTTCTTTATTTACAGTCATTTTTGTTGTTGTTGGTTTCTATGTGATCAAAGTGAAGTGCTATGCTGCCTGGTGTGGCTGGAGAGTCAACGATTCAGTTCCTTCTCAAACTGATAACTCTCAGGAGTTTCTCAATGAGAACCAAGTTGATCACCCCGTTTGGCTAATAGCCACGGTTGGTTTGCAGCAATCAATCATAAATTCCATTACAGTATTCAAGTATAGAAAAGATGAGAGTTTGATTGATGGAACTGAATGTTCGGTGTGTTTGAATGAGTTTCGTGAAGATGAAACCTTAAGACTCTTGCCAAAGTGCAATCATGCATTTCACATCCCTTGTATTGACACTTGGTTGAGATCTCATACCAATTGTCCTCTTTGCCGAGCTGGTATTGTATCTAACAATGTTCCTACTGAAGCATCCATGTCAAATTTGGCTTCAATGGAGCAAGAACATAACAACTTGGTGAGAAATCAAGAGACCCTAATGGAGAATTCAGAGAATAATGGTGGGTTAAGCAACAGCATGGTTATAAATGATGGAACAGGGGAATCAAGTGAAGCATTAGAGTTCATTGATGAATCAAATTCCAAGGATGGTGTACTAAATCATCCAATTCAGAATCTAAATGACGAGAAGCAAATAGAGATGGGGTCTGTTTCAACTGATTCAGGTGAGGAAAATTCTTGTTCTAAAGAACCTGAAAACAATGTTGATCATATACAAAATGACACAGAGTTGCACATGGTTAATCATTTGAAGCAAGATGGTGATTACTCAAAAACATGTAAATCAATGCGTCGTTCTTCAATTGAAGAATGTTTGCACATAAGCCCGGTATCTATGAAAAGATCATTCTCCTGGCATGGAAGGATTCCATCTACGAGAGGTTACATGAATCATCTAAACTCAACTCTTCCCTATTAG 1122 0.3886 MEMKHRKLFPSETTTNQTQEDCYGFCDPSCPYNCYSNPDYYFSPPPPSIEHSSQVNHLSSYLIILVSLFTVIFVVVGFYVIKVKCYAAWCGWRVNDSVPSQTDNSQEFLNENQVDHPVWLIATVGLQQSIINSITVFKYRKDESLIDGTECSVCLNEFREDETLRLLPKCNHAFHIPCIDTWLRSHTNCPLCRAGIVSNNVPTEASMSNLASMEQEHNNLVRNQETLMENSENNGGLSNSMVINDGTGESSEALEFIDESNSKDGVLNHPIQNLNDEKQIEMGSVSTDSGEENSCSKEPENNVDHIQNDTELHMVNHLKQDGDYSKTCKSMRRSSIEECLHISPVSMKRSFSWHGRIPSTRGYMNHLNSTLPY* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01464 373 Coils Coil 210 234 - -
Rops9g01464 373 Pfam Ring finger domain 150 193 IPR001841 -
Rops9g01464 373 MobiDBLite consensus disorder prediction 265 292 - -
Rops9g01464 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 201 IPR013083 -
Rops9g01464 373 MobiDBLite consensus disorder prediction 261 299 - -
Rops9g01464 373 PANTHER RING-H2 FINGER PROTEIN ATL16 45 352 IPR044600 GO:0016567|GO:0016740
Rops9g01464 373 SUPERFAMILY RING/U-box 139 198 - -
Rops9g01464 373 FunFam RING-H2 finger protein ATL54 126 199 - -
Rops9g01464 373 CDD RING-H2_EL5-like 150 193 - -
Rops9g01464 373 ProSiteProfiles Zinc finger RING-type profile. 151 193 IPR001841 -
Rops9g01464 373 SMART ring_2 151 192 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01464 Rops-Chr9 24356802 24358585 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01464 4 203 C3H Transcription Factor Family AT1G72220 48.291 4.95e-62 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01464 - - aprc:113847030 547.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01464 9 24356802 24358585 Rops9g01464 9 24356802 24358585 ECH